A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: PDRC03  PDB ID: 1HCQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT35_D0.278-0.5180.60415.291-13.4912.819
17C_DA8:DT30_D-0.5-0.0270.2577.439-16.114-2.885
19C_DA10:DT28_D1.103-0.572-0.12-0.309-12.6294.128
113C_DA14:DT24_D0.28-0.284-0.0343.323-11.667.937
11C_DC2:DG36_D0.464-0.4010.0724.108-8.707-9.494
16C_DC7:DG31_D0.106-0.313-0.4384.127-0.118-0.407
18C_DC9:DG29_D-0.428-0.434-0.0580.798-10.725-5.488
114C_DC15:DG23_D-0.044-0.6030.065.749-12.886-0.237
115C_DC16:DG22_D0.021-0.4130.635-15.717-10.8550.994
13C_DG4:DC34_D-0.489-0.8470.37612.464-9.228-4.282
14C_DG5:DC33_D-0.18-0.5060.323-1.987-13.556-1.457
110C_DG11:DC27_D-0.03-0.1890.1150.364-9.6251.627
112C_DG13:DC25_D-0.046-0.243-0.106-3.570.5683.835
117C_DG18:DC20_D-0.278-0.6390.049-0.166-4.277-3.09
15C_DT6:DA32_D-0.204-0.3420.024-1.327-11.3262.126
111C_DT12:DA26_D-0.293-0.1560.027-6.903-14.988-2.356
116C_DT17:DA21_D0.306-0.4810.157-16.55-6.853-9.48
119G_DA3:DT35_H0.308-0.2390.48514.563-11.853-3.47
124G_DA8:DT30_H-0.355-0.216-0.157.663-15.0973.47
126G_DA10:DT28_H1.16-0.686-0.3743.748-16.831-3.963
130G_DA14:DT24_H0.008-0.5810.09110.342-9.708-1.555
118G_DC2:DG36_H0.2-0.286-0.0161.006-9.487-9.807
123G_DC7:DG31_H0.823-0.2220.0390.2121.2465.379
125G_DC9:DG29_H-0.625-0.4-0.1764.781-12.003-5.996
131G_DC15:DG23_H0.397-0.6640.0272.697-14.3324.13
132G_DC16:DG22_H0.302-0.3620.219-9.98-16.8017.764
120G_DG4:DC34_H0.015-0.6580.29111.31-13.603-2.187
121G_DG5:DC33_H-0.283-0.6210.3731.841-15.924-0.511
127G_DG11:DC27_H0.715-0.383-0.141-6.36-7.268-6.292
129G_DG13:DC25_H0.226-0.5020.2312.382-3.197-3.928
134G_DG18:DC20_H-0.47-0.6120.184-2.048-9.3652.764
122G_DT6:DA32_H-0.101-0.2350.396-5.789-12.3382.214
128G_DT12:DA26_H-0.177-0.096-0.061-9.92-12.531-3.527
133G_DT17:DA21_H-0.666-0.240.378-12.977-12.682-4.169

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.