1HHW: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

Search for released structures

NDB ID: 1HHW PDB ID: 1HHW

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_DA4:U15_B	-0.47	-0.105	0.366	14.803	-17.998	-7.302
1	6	A_DA6:U13_B	-0.048	-0.037	-0.481	-2.888	-1.316	4.507
1	1	A_DC1:G18_B	0.589	-0.109	-0.096	21.222	-27.121	-2.817
1	9	A_DC9:G10_B	0.355	0.008	0.023	-1.952	-8.382	-1.55
1	3	A_DG3:C16_B	-0.756	-0.149	0.259	12.411	-11.839	-2.194
1	8	A_DG8:C11_B	-0.578	-0.046	0.533	13.132	-5.919	-2.402
1	2	A_DT2:A17_B	0.693	-0.108	-0.224	22.375	-24.883	3.677
1	7	A_DT7:A12_B	0.6	-0.114	-0.837	3.763	-10.452	1.204
1	5	A_TLN5:A14_B	0.658	-0.031	0.342	9.912	-9.837	0.721

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.