1HLO: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PDT042 PDB ID: 1HLO

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA103:DT125_D	-0.134	-0.146	0.317	0.714	-13.327	-1.23
1	5	C_DA106:DT122_D	-0.26	-0.338	0.11	4.823	-9.486	3.742
1	1	C_DC102:DG126_D	-0.051	-0.413	-0.174	10.47	7.71	-0.121
1	3	C_DC104:DG124_D	0.313	-0.191	-0.058	1.033	-15.152	3.232
1	4	C_DC105:DG123_D	-0.217	0.035	0.088	-8.345	-5.109	0.882
1	6	C_DC107:DG121_D	-0.404	-0.348	0.206	0.865	-17.027	-2.512
1	7	C_DG108:DC120_D	0.329	-0.161	0.401	-0.33	-15.266	-0.379
1	9	C_DG110:DC118_D	-0.086	-0.154	-0.087	9.345	-3.576	-2.288
1	10	C_DG111:DC117_D	0.364	-0.346	0.159	0.59	-3.344	-1.682
1	8	C_DT109:DA119_D	0.023	-0.105	0.226	-5.877	-3.664	-2.876
1	11	C_DT112:DA116_D	0.446	-0.24	-0.461	9.594	-3.63	-20.84

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.