A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PDT042  PDB ID: 1HLO 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA103:DT125_D-0.134-0.1460.3170.714-13.327-1.23
15C_DA106:DT122_D-0.26-0.3380.114.823-9.4863.742
11C_DC102:DG126_D-0.051-0.413-0.17410.477.71-0.121
13C_DC104:DG124_D0.313-0.191-0.0581.033-15.1523.232
14C_DC105:DG123_D-0.2170.0350.088-8.345-5.1090.882
16C_DC107:DG121_D-0.404-0.3480.2060.865-17.027-2.512
17C_DG108:DC120_D0.329-0.1610.401-0.33-15.266-0.379
19C_DG110:DC118_D-0.086-0.154-0.0879.345-3.576-2.288
110C_DG111:DC117_D0.364-0.3460.1590.59-3.344-1.682
18C_DT109:DA119_D0.023-0.1050.226-5.877-3.664-2.876
111C_DT112:DA116_D0.446-0.24-0.4619.594-3.63-20.84

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.