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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PDT042
PDB ID:
1HLO
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
C_DA103:DT125_D
-0.134
-0.146
0.317
0.714
-13.327
-1.23
1
5
C_DA106:DT122_D
-0.26
-0.338
0.11
4.823
-9.486
3.742
1
1
C_DC102:DG126_D
-0.051
-0.413
-0.174
10.47
7.71
-0.121
1
3
C_DC104:DG124_D
0.313
-0.191
-0.058
1.033
-15.152
3.232
1
4
C_DC105:DG123_D
-0.217
0.035
0.088
-8.345
-5.109
0.882
1
6
C_DC107:DG121_D
-0.404
-0.348
0.206
0.865
-17.027
-2.512
1
7
C_DG108:DC120_D
0.329
-0.161
0.401
-0.33
-15.266
-0.379
1
9
C_DG110:DC118_D
-0.086
-0.154
-0.087
9.345
-3.576
-2.288
1
10
C_DG111:DC117_D
0.364
-0.346
0.159
0.59
-3.344
-1.682
1
8
C_DT109:DA119_D
0.023
-0.105
0.226
-5.877
-3.664
-2.876
1
11
C_DT112:DA116_D
0.446
-0.24
-0.461
9.594
-3.63
-20.84
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.