1HLO: Base Pair Morphology Step Parameters

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NDB ID: PDT042 PDB ID: 1HLO

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA103DC104:DG124DT125_DD	0.621	-1.629	3.278	6.422	5.962	37.242	-3.223	-0.155	3.053	9.181	-9.889	38.224
1	5	CC_DA106DC107:DG121DT122_DD	-0.488	-0.664	3.394	-1.628	0.892	30.973	-1.419	0.587	3.395	1.668	3.044	31.027
1	1	CC_DC102DA103:DT125DG126_DD	-0.094	-0.637	3.648	-3.437	-3.994	34.699	-0.382	-0.426	3.689	-6.649	5.722	35.084
1	3	CC_DC104DC105:DG123DG124_DD	-0.038	-0.889	3.622	3.953	11.624	24.144	-4.998	1.136	2.858	25.766	-8.763	27.045
1	4	CC_DC105DA106:DT122DG123_DD	-0.16	0.686	3.34	-0.047	6.347	32.55	0.09	0.273	3.409	11.191	0.083	33.147
1	6	CC_DC107DG108:DC120DG121_DD	0.216	0.78	3.704	-0.401	7.089	39.571	0.206	-0.367	3.781	10.37	0.586	40.178
1	7	CC_DG108DT109:DA119DC120_DD	0.36	-0.588	3.496	3.254	2.814	29.984	-1.731	0.013	3.446	5.404	-6.248	30.284
1	9	CC_DG110DG111:DC117DC118_DD	0.102	-0.775	3.552	-1.909	1.014	34.118	-1.492	-0.499	3.517	1.726	3.249	34.184
1	10	CC_DG111DT112:DA116DC117_DD	-1.046	-1.677	3.344	3.42	3.065	24.218	-4.838	3.466	2.939	7.223	-8.059	24.643
1	8	CC_DT109DG110:DC118DA119_DD	0.357	0.233	3.124	1.115	1.945	34.519	0.104	-0.435	3.142	3.274	-1.877	34.589

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.