A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PDT042  PDB ID: 1HLO 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA103DC104:DG124DT125_DD0.621-1.6293.2786.4225.96237.242-3.223-0.1553.0539.181-9.88938.224
15CC_DA106DC107:DG121DT122_DD-0.488-0.6643.394-1.6280.89230.973-1.4190.5873.3951.6683.04431.027
11CC_DC102DA103:DT125DG126_DD-0.094-0.6373.648-3.437-3.99434.699-0.382-0.4263.689-6.6495.72235.084
13CC_DC104DC105:DG123DG124_DD-0.038-0.8893.6223.95311.62424.144-4.9981.1362.85825.766-8.76327.045
14CC_DC105DA106:DT122DG123_DD-0.160.6863.34-0.0476.34732.550.090.2733.40911.1910.08333.147
16CC_DC107DG108:DC120DG121_DD0.2160.783.704-0.4017.08939.5710.206-0.3673.78110.370.58640.178
17CC_DG108DT109:DA119DC120_DD0.36-0.5883.4963.2542.81429.984-1.7310.0133.4465.404-6.24830.284
19CC_DG110DG111:DC117DC118_DD0.102-0.7753.552-1.9091.01434.118-1.492-0.4993.5171.7263.24934.184
110CC_DG111DT112:DA116DC117_DD-1.046-1.6773.3443.423.06524.218-4.8383.4662.9397.223-8.05924.643
18CC_DT109DG110:DC118DA119_DD0.3570.2333.1241.1151.94534.5190.104-0.4353.1423.274-1.87734.589

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.