A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: PD0192  PDB ID: 1HLV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112B_DA12:DT10_C-0.1710.004-0.0879.183-11.571-3.639
113B_DA13:DT9_C0.417-0.023-0.099.068-9.8010.249
114B_DA14:DT8_C-0.081-0.049-0.387-7.521-16.1989.099
119B_DA19:DT3_C-0.268-0.1150.4411.097-17.9458.928
12B_DC2:DG20_C0.213-0.0040.377-3.219-6.262-3.607
13B_DC3:DG19_C-0.1560.0030.1831.752-4.512-0.611
16B_DC6:DG16_C0.167-0.2430.114-6.416-9.697-0.798
115B_DC15:DG7_C0.113-0.028-0.011-10.523-7.3650.545
11B_DG1:DC21_C0.243-0.002-0.027-1.86-3.8271.229
17B_DG7:DC15_C-0.035-0.057-0.216-11.96-6.8791.847
110B_DG10:DC12_C0.116-0.0110.528.114-12.8781.201
111B_DG11:DC11_C-0.212-0.145-0.0565.6232.063-0.844
116B_DG16:DC6_C-0.438-0.21-0.0174.010.793-1.479
117B_DG17:DC5_C0.012-0.0310.40823.6581.974-1.351
118B_DG18:DC4_C-0.346-0.0010.43114.953-17.576-1.47
14B_DT4:DA18_C-0.622-0.2880.0761.313-10.697-3.581
15B_DT5:DA17_C-0.481-0.157-0.0531.788-15.926-6.774
18B_DT8:DA14_C-0.15-0.1170.02-1.289-8.9791.368
19B_DT9:DA13_C-0.042-0.266-0.1517.016-2.6752.558
120B_DT20:DA2_C0.2340.070.504-5.282-21.0944.412
121B_DT21:DA1_C-0.2750.0830.065-11.641-22.066-2.472

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.