1HMH: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: UHX026 PDB ID: 1HMH

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_A23:DT13_B	0.025	-0.496	0.232	-1.116	-13.309	-4.032
1	14	A_A130:G80_A	-6.283	-4.313	-0.025	-19.356	17.88	-0.275
1	15	A_A140:U70_A	-5.958	-0.431	0.066	16.879	-5.514	53.697
1	16	A_A151:DT161_B	0.592	1.214	-1.37	-12.198	-23.57	-40.408
1	3	A_C25:DG15_B	-0.026	-0.453	0.397	-11.406	-9.612	1.009
1	6	A_C22:DG12_B	0.266	-0.365	0.113	3.335	-6.037	1.968
1	7	A_C21:DG11_B	0.712	-0.236	-0.321	7.432	-13.8	5.654
1	8	A_C30:DC170_B	2.056	-2.23	0.241	1.146	-19.21	16.161
1	11	A_C112:G102_A	0.094	-0.302	-0.074	-0.006	-13.81	4.883
1	12	A_C111:G101_A	0.071	-0.165	-0.159	5.822	-2.319	-0.384
1	17	A_C152:DG162_B	0.189	0.091	0.148	-0.584	-19.042	5.354
1	18	A_C153:DG163_B	-0.147	-0.364	-0.047	2.045	-11.893	-2.963
1	1	A_G27:DC17_B	-0.197	-0.339	0.3	-0.245	-14.907	1.94
1	2	A_G26:DC16_B	-0.406	-0.363	-0.312	-16.954	-18.575	4.918
1	4	A_G24:DC14_B	0.18	-0.295	0.294	-3.867	-15.031	1.729
1	9	A_G114:C104_A	-0.204	-0.423	-0.135	-2.57	6.044	0.442
1	10	A_G113:C103_A	-0.411	-0.443	-0.019	1.459	-4.314	2.106
1	13	A_G120:A90_A	6.701	-4.513	-0.045	10.424	-9.064	-3.769
1	19	A_G154:DC164_B	-0.18	-0.579	0.243	-1.053	-7.562	-1.503
1	20	A_U155:DA165_B	0.513	-0.183	0.52	3.114	-5.741	7.135
1	38	C_A23:DT13_D	-0.085	-0.31	0.416	10.253	-12.297	-3.295
1	21	C_A24L:A22L_A	1.066	2.586	-1.347	-40.315	27.411	-172.353
1	27	C_A130:G80_C	-6.338	-4.813	0.503	-18.493	19.378	-2.42
1	28	C_A140:U70_C	-6.184	-0.816	0.364	26.477	-1.762	47.744
1	29	C_A151:DT161_D	0.526	1.145	-1.266	-0.539	-34.292	-36.583
1	36	C_C25:DG15_D	0.5	-0.299	-0.076	-1.111	-8.975	0.585
1	39	C_C22:DG12_D	0.044	-0.272	0.332	8.705	-11.211	3.249
1	40	C_C21:DG11_D	0.445	-0.522	0.006	0.557	-7.906	0.647
1	41	C_C30:DC170_D	2.817	-1.741	0.78	2.038	-18.632	29.271
1	24	C_C112:G102_C	-0.157	-0.274	-0.157	1.538	-17.66	4.187
1	25	C_C111:G101_C	0.198	-0.242	-0.509	3.007	-11.193	0.665
1	30	C_C152:DG162_D	0.21	-0.173	0.742	-10.12	-17.057	-5.267
1	31	C_C153:DG163_D	0.14	-0.274	0.774	-10.223	-15.346	0.036
1	34	C_G27:DC17_D	-0.066	-0.149	0.115	-4.411	-8.306	5.615
1	35	C_G26:DC16_D	-0.181	-0.144	-0.155	-5.551	-18.269	-1.565
1	37	C_G24:DC14_D	-0.001	-0.304	0.119	-6.064	-20.628	0.919
1	22	C_G114:C104_C	-0.415	-0.302	0.021	-0.984	-3.907	0.564
1	23	C_G113:C103_C	-0.397	-0.313	-0.432	-8.788	-10.861	-1.301
1	26	C_G120:A90_C	7.054	-4.749	-0.322	4.121	-6.185	-11.011
1	32	C_G154:DC164_D	-0.046	-0.337	0.08	-3.717	-19.763	1.303
1	33	C_U155:DA165_D	0.358	-0.274	0.218	7.537	-4.976	-0.302
1	46	E_A23:DT13_F	0.215	-0.543	0.06	5.955	-18.099	-4.275
1	50	E_A24L:G21L_E	-6.99	-5.454	0.629	-14.515	1.463	-19.798
1	56	E_A130:G80_E	-6.611	-4.599	0.318	-19.025	18.459	-3.864
1	57	E_A140:U70_E	-6.685	-0.761	0.326	32.645	-2.421	50.362
1	58	E_A151:DT161_F	0.605	0.747	-0.987	-5.49	-37.363	-34.743
1	44	E_C25:DG15_F	0.42	-0.568	0.265	0.524	-8.082	0.561
1	47	E_C22:DG12_F	0.603	-0.445	0.189	5.078	-8.766	2.348
1	48	E_C21:DG11_F	0.006	-0.261	-0.115	14.347	-12.664	-0.678
1	49	E_C30:DC170_F	2.502	-1.71	0.373	8.247	-14.739	25.873
1	53	E_C112:G102_E	0.807	-0.283	0.225	-6.234	-6.654	0.921
1	54	E_C111:G101_E	0.076	0.028	-0.159	3.089	0.793	3.052
1	59	E_C152:DG162_F	-0.235	-0.381	0.471	-1.022	-19.244	-2.347
1	60	E_C153:DG163_F	-0.205	-0.28	0.735	-3.737	-6.125	-1.224
1	42	E_G27:DC17_F	-0.06	-0.399	0.059	-1.727	-2.634	-1.503
1	43	E_G26:DC16_F	-0.121	-0.376	0.169	0.839	-11.469	1.925
1	45	E_G24:DC14_F	-0.549	-0.091	0.316	-3.612	-16.178	11.753
1	51	E_G114:C104_E	-0.534	-0.114	-0.287	-3.684	0.656	2.216
1	52	E_G113:C103_E	-0.137	-0.402	-0.054	-3.828	-5.829	0.373
1	55	E_G120:A90_E	6.837	-4.25	0.342	8.43	-9.914	-2.964
1	61	E_G154:DC164_F	-0.491	-0.52	0.189	-6.105	-27.639	5.283
1	62	E_U155:DA165_F	-0.557	-0.379	0.137	-8.154	-4.684	-3.814

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.