A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: UHX026  PDB ID: 1HMH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A23:DT13_B0.025-0.4960.232-1.116-13.309-4.032
114A_A130:G80_A-6.283-4.313-0.025-19.35617.88-0.275
115A_A140:U70_A-5.958-0.4310.06616.879-5.51453.697
116A_A151:DT161_B0.5921.214-1.37-12.198-23.57-40.408
13A_C25:DG15_B-0.026-0.4530.397-11.406-9.6121.009
16A_C22:DG12_B0.266-0.3650.1133.335-6.0371.968
17A_C21:DG11_B0.712-0.236-0.3217.432-13.85.654
18A_C30:DC170_B2.056-2.230.2411.146-19.2116.161
111A_C112:G102_A0.094-0.302-0.074-0.006-13.814.883
112A_C111:G101_A0.071-0.165-0.1595.822-2.319-0.384
117A_C152:DG162_B0.1890.0910.148-0.584-19.0425.354
118A_C153:DG163_B-0.147-0.364-0.0472.045-11.893-2.963
11A_G27:DC17_B-0.197-0.3390.3-0.245-14.9071.94
12A_G26:DC16_B-0.406-0.363-0.312-16.954-18.5754.918
14A_G24:DC14_B0.18-0.2950.294-3.867-15.0311.729
19A_G114:C104_A-0.204-0.423-0.135-2.576.0440.442
110A_G113:C103_A-0.411-0.443-0.0191.459-4.3142.106
113A_G120:A90_A6.701-4.513-0.04510.424-9.064-3.769
119A_G154:DC164_B-0.18-0.5790.243-1.053-7.562-1.503
120A_U155:DA165_B0.513-0.1830.523.114-5.7417.135
138C_A23:DT13_D-0.085-0.310.41610.253-12.297-3.295
121C_A24L:A22L_A1.0662.586-1.347-40.31527.411-172.353
127C_A130:G80_C-6.338-4.8130.503-18.49319.378-2.42
128C_A140:U70_C-6.184-0.8160.36426.477-1.76247.744
129C_A151:DT161_D0.5261.145-1.266-0.539-34.292-36.583
136C_C25:DG15_D0.5-0.299-0.076-1.111-8.9750.585
139C_C22:DG12_D0.044-0.2720.3328.705-11.2113.249
140C_C21:DG11_D0.445-0.5220.0060.557-7.9060.647
141C_C30:DC170_D2.817-1.7410.782.038-18.63229.271
124C_C112:G102_C-0.157-0.274-0.1571.538-17.664.187
125C_C111:G101_C0.198-0.242-0.5093.007-11.1930.665
130C_C152:DG162_D0.21-0.1730.742-10.12-17.057-5.267
131C_C153:DG163_D0.14-0.2740.774-10.223-15.3460.036
134C_G27:DC17_D-0.066-0.1490.115-4.411-8.3065.615
135C_G26:DC16_D-0.181-0.144-0.155-5.551-18.269-1.565
137C_G24:DC14_D-0.001-0.3040.119-6.064-20.6280.919
122C_G114:C104_C-0.415-0.3020.021-0.984-3.9070.564
123C_G113:C103_C-0.397-0.313-0.432-8.788-10.861-1.301
126C_G120:A90_C7.054-4.749-0.3224.121-6.185-11.011
132C_G154:DC164_D-0.046-0.3370.08-3.717-19.7631.303
133C_U155:DA165_D0.358-0.2740.2187.537-4.976-0.302
146E_A23:DT13_F0.215-0.5430.065.955-18.099-4.275
150E_A24L:G21L_E-6.99-5.4540.629-14.5151.463-19.798
156E_A130:G80_E-6.611-4.5990.318-19.02518.459-3.864
157E_A140:U70_E-6.685-0.7610.32632.645-2.42150.362
158E_A151:DT161_F0.6050.747-0.987-5.49-37.363-34.743
144E_C25:DG15_F0.42-0.5680.2650.524-8.0820.561
147E_C22:DG12_F0.603-0.4450.1895.078-8.7662.348
148E_C21:DG11_F0.006-0.261-0.11514.347-12.664-0.678
149E_C30:DC170_F2.502-1.710.3738.247-14.73925.873
153E_C112:G102_E0.807-0.2830.225-6.234-6.6540.921
154E_C111:G101_E0.0760.028-0.1593.0890.7933.052
159E_C152:DG162_F-0.235-0.3810.471-1.022-19.244-2.347
160E_C153:DG163_F-0.205-0.280.735-3.737-6.125-1.224
142E_G27:DC17_F-0.06-0.3990.059-1.727-2.634-1.503
143E_G26:DC16_F-0.121-0.3760.1690.839-11.4691.925
145E_G24:DC14_F-0.549-0.0910.316-3.612-16.17811.753
151E_G114:C104_E-0.534-0.114-0.287-3.6840.6562.216
152E_G113:C103_E-0.137-0.402-0.054-3.828-5.8290.373
155E_G120:A90_E6.837-4.250.3428.43-9.914-2.964
161E_G154:DC164_F-0.491-0.520.189-6.105-27.6395.283
162E_U155:DA165_F-0.557-0.3790.137-8.154-4.684-3.814

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.