A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: UP0002  PDB ID: 1HZS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_APN3:TPN12_B0.101-0.1360.2495.222-12.214-2.164
14A_CPN6:GPN9_B0.157-0.1260.166-5.59-1.561-2.408
11A_GPN1:CPN14_B0.16-0.118-0.109-1.985-2.0682.092
13A_TPN4:APN11_B-0.237-0.120.32-7.999-12.504-2.245
17C_APN19:TPN28_D-0.064-0.1730.1333.7998.516-0.599
15C_CPN22:GPN25_D0.123-0.199-0.1150.0761.091-4.407
16C_GPN17:CPN30_D-0.176-0.121-0.048-3.7550.114-2.453
18C_TPN20:APN27_D0.137-0.160.364-6.62211.676-1.541

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.