1HZS: Base Pair Morphology Parameters

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As of 14-Aug-2019 number of released structures: 10334

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NDB ID: UP0002 PDB ID: 1HZS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_APN3:TPN12_B	0.101	-0.136	0.249	5.222	-12.214	-2.164
1	4	A_CPN6:GPN9_B	0.157	-0.126	0.166	-5.59	-1.561	-2.408
1	1	A_GPN1:CPN14_B	0.16	-0.118	-0.109	-1.985	-2.068	2.092
1	3	A_TPN4:APN11_B	-0.237	-0.12	0.32	-7.999	-12.504	-2.245
1	7	C_APN19:TPN28_D	-0.064	-0.173	0.133	3.799	8.516	-0.599
1	5	C_CPN22:GPN25_D	0.123	-0.199	-0.115	0.076	1.091	-4.407
1	6	C_GPN17:CPN30_D	-0.176	-0.121	-0.048	-3.755	0.114	-2.453
1	8	C_TPN20:APN27_D	0.137	-0.16	0.364	-6.622	11.676	-1.541

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.