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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID:
UP0002
PDB ID:
1HZS
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
A_APN3:TPN12_B
0.101
-0.136
0.249
5.222
-12.214
-2.164
1
4
A_CPN6:GPN9_B
0.157
-0.126
0.166
-5.59
-1.561
-2.408
1
1
A_GPN1:CPN14_B
0.16
-0.118
-0.109
-1.985
-2.068
2.092
1
3
A_TPN4:APN11_B
-0.237
-0.12
0.32
-7.999
-12.504
-2.245
1
7
C_APN19:TPN28_D
-0.064
-0.173
0.133
3.799
8.516
-0.599
1
5
C_CPN22:GPN25_D
0.123
-0.199
-0.115
0.076
1.091
-4.407
1
6
C_GPN17:CPN30_D
-0.176
-0.121
-0.048
-3.755
0.114
-2.453
1
8
C_TPN20:APN27_D
0.137
-0.16
0.364
-6.622
11.676
-1.541
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.