1I0F: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: AD0011 PDB ID: 1I0F

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_1276:DA15_B	-0.041	-0.072	0.384	5.384	-13.979	4.816
1	5	A_DA5:12716_B	0.222	-0.056	0.309	-1.499	-11.02	-4.261
1	7	A_DA7:DT14_B	0.006	-0.14	0.09	2.098	-12.63	2.279
1	2	A_DC2:DG19_B	0.143	-0.101	-0.155	8.488	-15.588	1.054
1	8	A_DC8:DG13_B	0.22	-0.169	0.003	6.152	-12.439	-0.296
1	10	A_DC10:DG11_B	0.194	-0.16	0.083	-4.858	5.001	-0.281
1	1	A_DG1:DC20_B	-0.285	-0.169	0.232	1.61	-7.52	-1.823
1	3	A_DG3:DC18_B	-0.229	-0.056	0.02	-7.115	-14.078	2.666
1	9	A_DG9:DC12_B	-0.228	-0.163	0.044	-5.901	-9.151	2.66
1	4	A_DT4:DA17_B	-0.1	-0.092	-0.012	-3.733	-15.567	-1.384

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.