A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: AD0011  PDB ID: 1I0F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_1276:DA15_B-0.041-0.0720.3845.384-13.9794.816
15A_DA5:12716_B0.222-0.0560.309-1.499-11.02-4.261
17A_DA7:DT14_B0.006-0.140.092.098-12.632.279
12A_DC2:DG19_B0.143-0.101-0.1558.488-15.5881.054
18A_DC8:DG13_B0.22-0.1690.0036.152-12.439-0.296
110A_DC10:DG11_B0.194-0.160.083-4.8585.001-0.281
11A_DG1:DC20_B-0.285-0.1690.2321.61-7.52-1.823
13A_DG3:DC18_B-0.229-0.0560.02-7.115-14.0782.666
19A_DG9:DC12_B-0.228-0.1630.044-5.901-9.1512.66
14A_DT4:DA17_B-0.1-0.092-0.012-3.733-15.567-1.384

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.