1I0F: Base Pair Morphology Step Parameters

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NDB ID: AD0011 PDB ID: 1I0F

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_1276DA7:DT14DA15_BB	-0.279	-1.473	3.108	1.677	15.17	31.117	-4.472	0.69	2.162	26.383	-2.916	34.575
1	5	AA_DA51276:DA1512716_BB	0.817	-1.428	3.079	1.379	4.785	31.62	-3.381	-1.254	2.87	8.713	-2.512	32.0
1	7	AA_DA7DC8:DG13DT14_BB	0.128	-1.682	3.277	0.406	3.012	31.748	-3.597	-0.161	3.11	5.49	-0.741	31.89
1	2	AA_DC2DG3:DC18DG19_BB	0.324	-2.071	3.573	-0.324	11.236	25.833	-6.802	-0.739	2.469	23.752	0.686	28.135
1	8	AA_DC8DG9:DC12DG13_BB	-0.148	-1.955	3.426	0.153	11.782	28.495	-5.831	0.307	2.443	22.746	-0.296	30.789
1	1	AA_DG1DC2:DG19DC20_BB	0.318	-1.385	3.109	3.737	0.994	39.416	-2.155	-0.054	3.091	1.469	-5.524	39.598
1	3	AA_DG3DT4:DA17DC18_BB	-1.235	-1.493	3.1	-2.122	5.307	36.179	-3.052	1.696	2.925	8.481	3.39	36.613
1	9	AA_DG9DC10:DG11DC12_BB	0.222	-1.737	3.37	0.933	1.456	35.153	-3.094	-0.225	3.303	2.41	-1.543	35.194
1	4	AA_DT4DA5:12716DA17_BB	0.67	-1.684	3.102	0.875	19.142	26.568	-5.634	-1.071	1.583	36.262	-1.658	32.656

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.