A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: AD0018  PDB ID: 1I0P 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_1266:DA15_B-0.063-0.1070.2097.055-14.4894.392
15A_DA5:12616_B0.313-0.0790.3040.928-12.188-4.701
17A_DA7:DT14_B-0.037-0.1620.0484.589-11.7162.943
12A_DC2:DG19_B0.191-0.0930.0955.71-13.4411.467
18A_DC8:DG13_B0.254-0.164-0.1886.248-13.031.523
110A_DC10:DG11_B0.213-0.1940.13-3.5567.854-1.886
11A_DG1:DC20_B-0.296-0.2090.2152.856-10.099-1.703
13A_DG3:DC18_B-0.367-0.1390.087-7.631-11.771.105
19A_DG9:DC12_B-0.026-0.1550.169-5.597-9.7811.447
14A_DT4:DA17_B-0.159-0.177-0.11-5.389-16.9131.042

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.