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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
AD0018
PDB ID:
1I0P
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
AA_1266DA7:DT14DA15_BB
-0.211
-1.39
3.146
0.073
14.589
31.763
-4.258
0.362
2.306
25.069
-0.125
34.875
1
5
AA_DA51266:DA1512616_BB
0.684
-1.383
3.135
2.362
4.25
30.861
-3.325
-0.85
2.966
7.925
-4.405
31.232
1
7
AA_DA7DC8:DG13DT14_BB
0.222
-1.647
3.277
1.476
3.292
32.45
-3.489
-0.144
3.106
5.868
-2.63
32.645
1
2
AA_DC2DG3:DC18DG19_BB
0.338
-2.231
3.439
0.35
8.913
24.442
-7.252
-0.662
2.488
20.211
-0.794
25.996
1
8
AA_DC8DG9:DC12DG13_BB
-0.148
-2.006
3.405
-2.453
10.766
29.2
-5.657
-0.162
2.528
20.455
4.66
31.175
1
1
AA_DG1DC2:DG19DC20_BB
0.427
-1.441
3.18
1.704
1.517
40.282
-2.254
-0.433
3.14
2.2
-2.472
40.344
1
3
AA_DG3DT4:DA17DC18_BB
-1.054
-1.494
3.146
0.395
5.683
36.063
-3.113
1.734
2.875
9.109
-0.634
36.496
1
9
AA_DG9DC10:DG11DC12_BB
0.046
-1.909
3.353
2.765
0.31
33.37
-3.367
0.386
3.328
0.539
-4.804
33.482
1
4
AA_DT4DA5:12616DA17_BB
0.624
-1.657
2.971
0.335
20.344
27.226
-5.305
-1.031
1.43
37.317
-0.614
33.873
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.