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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
AD0019
PDB ID:
1I0Q
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
A_1266:DA15_B
-0.069
-0.062
0.241
5.472
-13.369
4.225
1
5
A_DA5:12616_B
0.234
-0.059
0.207
-2.049
-12.939
-4.815
1
7
A_DA7:DT14_B
-0.049
-0.106
0.066
5.239
-11.935
2.934
1
2
A_DC2:DG19_B
0.132
-0.084
0.149
4.351
-13.473
1.361
1
8
A_DC8:DG13_B
0.22
-0.142
-0.1
6.871
-12.479
0.862
1
10
A_DC10:DG11_B
0.295
-0.12
0.106
-1.648
6.059
-0.551
1
1
A_DG1:DC20_B
-0.278
-0.184
0.282
3.748
-8.741
-2.441
1
3
A_DG3:DC18_B
-0.364
-0.12
-0.061
-10.291
-13.487
1.896
1
9
A_DG9:DC12_B
-0.014
-0.221
0.229
-4.398
-10.762
0.795
1
4
A_DT4:DA17_B
-0.161
-0.144
-0.108
-4.814
-16.606
1.584
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.