1I0Q: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

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NDB ID: AD0019 PDB ID: 1I0Q

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_1266:DA15_B	-0.069	-0.062	0.241	5.472	-13.369	4.225
1	5	A_DA5:12616_B	0.234	-0.059	0.207	-2.049	-12.939	-4.815
1	7	A_DA7:DT14_B	-0.049	-0.106	0.066	5.239	-11.935	2.934
1	2	A_DC2:DG19_B	0.132	-0.084	0.149	4.351	-13.473	1.361
1	8	A_DC8:DG13_B	0.22	-0.142	-0.1	6.871	-12.479	0.862
1	10	A_DC10:DG11_B	0.295	-0.12	0.106	-1.648	6.059	-0.551
1	1	A_DG1:DC20_B	-0.278	-0.184	0.282	3.748	-8.741	-2.441
1	3	A_DG3:DC18_B	-0.364	-0.12	-0.061	-10.291	-13.487	1.896
1	9	A_DG9:DC12_B	-0.014	-0.221	0.229	-4.398	-10.762	0.795
1	4	A_DT4:DA17_B	-0.161	-0.144	-0.108	-4.814	-16.606	1.584

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.