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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
1I3X
PDB ID:
1I3X
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
A_C3:G17_A
1.41
-0.584
0.058
-5.071
-12.736
-3.492
1
7
A_C7:G13_A
0.894
-0.43
-0.26
25.977
-23.762
0.144
1
1
A_G1:C19_A
-0.953
-0.488
-0.067
-9.687
-12.968
-4.254
1
2
A_G2:C18_A
-0.606
-0.465
-0.046
-10.485
-16.924
-3.06
1
5
A_G5:C15_A
-0.345
-0.378
-0.017
-3.18
-9.762
-1.258
1
6
A_G6:C14_A
-1.187
-0.528
0.369
18.499
-0.346
-6.89
1
4
A_U4:A16_A
0.063
-0.302
0.059
-1.035
-14.585
-0.45
1
8
A_U8:C12_A
-0.803
-1.833
0.436
-6.386
0.29
3.52
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.