1I3Y: Base Pair Morphology Step Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 1I3Y PDB ID: 1I3Y

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_C3U4:A16G17_AA	0.234	-1.694	2.77	4.58	10.121	29.497	-4.579	0.227	2.1	19.048	-8.62	31.477
1	7	AA_C7OMU8:C12G13_AA	-0.582	-1.197	4.044	0.475	-6.215	33.907	-0.796	1.076	4.183	-10.546	-0.806	34.459
1	1	AA_G1G2:C18C19_AA	-0.261	-1.336	2.997	-3.465	5.23	37.49	-2.647	0.006	2.804	8.068	5.345	37.993
1	2	AA_G2C3:G17C18_AA	0.051	-1.032	2.898	0.29	5.938	45.601	-1.765	-0.043	2.75	7.623	-0.373	45.966
1	5	AA_G5G6:C14C15_AA	0.361	-1.604	3.018	-4.559	-8.188	32.21	-1.467	-1.359	3.238	-14.382	8.007	33.511
1	6	AA_G6C7:G13C14_AA	-0.531	-1.575	3.066	2.291	-1.824	39.428	-2.127	1.039	3.098	-2.699	-3.391	39.533
1	4	AA_U4G5:C15A16_AA	-0.126	-1.978	3.432	-1.256	6.479	26.356	-5.81	-0.041	2.875	13.934	2.701	27.156

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.