1I6U: Base Pair Morphology Step Parameters

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NDB ID: PR0047 PDB ID: 1I6U

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	10	CC_A11G12:C27U28_CC	0.086	-2.004	3.743	5.482	9.909	30.733	-5.369	0.848	2.945	17.95	-9.931	32.706
1	4	CC_C4C5:G33G34_CC	-0.024	-2.197	3.218	-3.425	7.944	29.816	-5.484	-0.549	2.549	15.044	6.487	31.019
1	5	CC_C5C6:G32G33_CC	-0.668	-2.116	3.093	0.369	3.435	28.904	-4.892	1.402	2.82	6.851	-0.736	29.105
1	6	CC_C6G7:C31G32_CC	-0.132	-1.764	3.415	-2.081	9.555	27.409	-5.523	-0.174	2.665	19.399	4.225	29.069
1	14	CC_C14U15:A22G23_CC	-0.263	-1.579	3.384	-1.903	5.345	33.328	-3.58	0.144	3.11	9.236	3.288	33.794
1	16	CC_C16U17:G20G21_CC	-0.954	-0.781	3.398	8.333	6.845	97.033	-0.636	0.777	3.284	4.558	-5.549	97.48
1	1	CC_G1G2:C36C37_CC	0.04	-1.911	3.115	-0.275	4.091	29.822	-4.444	-0.129	2.833	7.901	0.531	30.096
1	2	CC_G2G3:C35C36_CC	0.719	-1.986	3.117	1.917	2.587	30.805	-4.187	-1.001	2.982	4.854	-3.596	30.969
1	3	CC_G3C4:G34C35_CC	-1.061	-2.168	3.029	-1.261	4.637	30.038	-4.953	1.8	2.713	8.875	2.414	30.411
1	7	CC_G7G8:C30C31_CC	0.597	-1.932	3.422	-0.049	8.311	32.768	-4.637	-1.035	2.86	14.444	0.084	33.777
1	8	CC_G8U9:G29C30_CC	0.024	-1.694	3.493	2.929	6.425	43.434	-2.889	0.254	3.218	8.613	-3.927	43.977
1	11	CC_G12U25:A26C27_CC	-0.307	2.236	-2.128	155.922	62.075	-179.514	-1.116	-0.157	-2.13	-31.037	77.961	-179.948
1	9	CC_U9A11:U28G29_CC	-2.523	-1.601	2.825	9.948	7.226	43.937	-2.543	3.913	1.965	9.44	-12.996	45.542
1	13	CC_U13C14:G23A24_CC	-0.303	-1.506	3.37	-2.912	7.939	32.935	-3.826	0.061	2.953	13.724	5.033	33.974
1	15	CC_U15C16:G21A22_CC	0.523	-1.386	3.115	5.376	2.844	33.561	-2.793	-0.083	3.035	4.875	-9.216	34.092
1	12	CC_U25U13:A24A26_CC	1.889	-2.368	0.728	148.585	-32.489	59.083	-1.015	-0.07	2.398	-17.733	-81.1	155.782
1	26	DD_A11G12:C27U28_DD	0.375	-2.003	3.696	3.006	10.499	31.327	-5.352	-0.132	2.914	18.744	-5.367	33.131
1	20	DD_C4C5:G33G34_DD	-0.03	-2.009	3.247	-2.948	4.831	29.513	-4.814	-0.515	2.878	9.375	5.721	30.039
1	21	DD_C5C6:G32G33_DD	-0.528	-2.018	3.073	-2.344	3.986	33.372	-4.072	0.565	2.85	6.899	4.057	33.682
1	22	DD_C6G7:C31G32_DD	-0.054	-1.994	3.023	0.205	7.987	28.672	-5.296	0.142	2.392	15.746	-0.405	29.742
1	30	DD_C14U15:A22G23_DD	-0.731	-2.082	3.161	-2.312	7.103	27.487	-5.693	1.011	2.604	14.609	4.755	28.465
1	32	DD_C16U17:G20G21_DD	-1.394	-0.884	3.458	9.025	5.227	95.544	-0.689	1.101	3.311	3.521	-6.08	95.974
1	17	DD_G1G2:C36C37_DD	-0.015	-2.077	2.938	-4.683	3.468	28.28	-4.833	-0.867	2.638	7.004	9.458	28.862
1	18	DD_G2G3:C35C36_DD	-0.005	-1.863	3.155	3.482	9.134	32.221	-4.547	0.514	2.533	16.004	-6.101	33.634
1	19	DD_G3C4:G34C35_DD	0.102	-1.428	3.103	0.363	5.928	33.023	-3.363	-0.123	2.813	10.325	-0.633	33.538
1	23	DD_G7G8:C30C31_DD	0.204	-1.874	3.653	1.229	11.766	32.905	-4.948	-0.15	2.842	19.984	-2.087	34.911
1	24	DD_G8U9:G29C30_DD	-0.234	-1.507	3.336	1.392	1.106	43.274	-2.152	0.455	3.29	1.499	-1.887	43.309
1	27	DD_G12U25:A26C27_DD	0.173	2.269	-2.22	156.899	59.677	-157.822	-1.056	-0.121	-2.364	-29.878	78.554	-177.67
1	25	DD_U9A11:U28G29_DD	-2.692	-1.568	3.143	12.932	10.07	44.388	-2.623	4.215	1.949	12.822	-16.467	47.173
1	29	DD_U13C14:G23A24_DD	-0.479	-1.802	3.529	-7.457	10.661	36.061	-4.116	-0.225	2.938	16.571	11.591	38.263
1	31	DD_U15C16:G21A22_DD	0.508	-1.788	3.457	-4.085	5.361	35.369	-3.664	-1.409	3.086	8.726	6.648	35.985
1	28	DD_U25U13:A24A26_DD	1.981	-2.24	0.778	153.302	-34.289	54.769	-0.919	-0.026	2.505	-18.483	-82.633	159.686

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.