A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
Search for released structures

NDB ID: TR0004  PDB ID: 1I9V 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
113A_5MU54:A58_A4.095-1.6510.251-3.5146.199-104.446
15A_A5:U68_A-0.386-0.25-0.0110.436-16.753-1.253
117A_A23:U12_A0.222-0.151-0.0196.061-14.462-0.489
123A_A29:U41_A0.294-0.363-0.0350.777-3.894.309
12A_C2:G71_A-0.114-0.1240.085-0.47-16.496-7.101
119A_C25:G10_A0.591-0.0650.2375.459-10.520.939
121A_C27:G43_A-0.255-0.0660.4247.697-12.4973.794
122A_C28:G42_A-0.309-0.160.1245.178-14.324-1.328
125A_C32:A38_A7.383-3.1891.326-9.11911.3042.136
18A_C49:G65_A-0.1090.0280.0382.318-7.3810.154
11A_G1:C72_A-0.285-0.231-0.471-11.529-1.2452.354
13A_G3:C70_A1.026-0.075-0.117-4.968-11.638-3.027
14A_G4:U69_A-1.74-0.6680.35413.636-9.267-4.531
114A_G15:C48_A-0.0643.8380.0710.8891.174154.361
126A_G19:C56_A0.0290.0420.152-23.88-20.3852.028
116A_G22:C13_A-0.284-0.1050.107-4.456-0.65-1.126
118A_G24:C11_A-0.022-0.402-0.0820.493-12.323-0.293
120A_G26:A44_A-0.8221.073-0.36526.379-14.815-20.299
124A_G30:C40_A0.138-0.204-1.283-29.645-25.756-0.678
110A_G51:C63_A-0.206-0.396-0.428-6.947-17.867-0.396
112A_G53:C61_A0.0120.0350.323-2.388-6.0426.716
16A_U6:A67_A0.643-0.3930.317-7.501-19.5044.606
17A_U7:A66_A0.445-0.182-0.229-3.0771.253-3.523
115A_U8:A14_A3.927-1.9410.926-4.48.896-103.112
19A_U50:A64_A-0.584-0.0990.0112.487-11.561-2.417
111A_U52:A62_A-0.22-0.274-0.0973.966-12.9322.53

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.