A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: AH0016  PDB ID: 1ID9 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_C2:G7_B0.111-0.1990.056-2.206-11.376-1.567
15A_C5:U4_B0.5530.045-0.0998.885-2.911-39.783
18A_C8:G1_B0.162-0.150.221-5.646-4.68-0.728
11A_G1:C8_B0.06-0.15-0.034-5.384-12.337-0.423
16A_G6:U3_B-2.442-0.686-0.0833.444-9.707-4.135
17A_G7:C2_B-0.185-0.1620.037-4.888-13.163-0.4
13A_U3:G6_B2.418-0.5330.193-1.211-7.4580.714
14A_U4:C5_B-0.5640.126-0.1321.891-2.525-41.505

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.