1IE1: Base Pair Morphology Step Parameters

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NDB ID: 1IE1 PDB ID: 1IE1

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_A6A7:A15U17_AA	0.408	0.412	2.849	1.37	-0.716	-88.487	-0.282	0.317	2.846	0.513	0.982	-88.498
1	7	AA_A7U9:A14A15_AA	1.846	1.314	6.517	13.591	-9.161	154.967	0.732	-0.858	6.539	-4.69	-6.958	155.226
1	3	AA_C3C4:G19G20_AA	0.31	-2.094	2.862	6.566	20.002	33.112	-4.861	0.105	1.447	31.456	-10.326	39.079
1	4	AA_C4G5:A18G19_AA	-0.055	0.198	3.845	-9.657	-12.777	54.132	1.062	-0.586	3.677	-13.706	10.359	56.28
1	1	AA_G1G2:C21C22_AA	0.449	-1.359	3.258	1.539	-12.904	38.298	-0.418	-0.466	3.532	-19.013	-2.268	40.364
1	2	AA_G2C3:G20C21_AA	0.406	-2.114	2.826	2.455	9.487	32.066	-4.885	-0.39	2.155	16.693	-4.32	33.492
1	5	AA_G5A6:U17A18_AA	-5.131	-1.375	3.366	-0.034	-7.366	-5.51	21.886	-32.064	0.899	53.251	-0.244	-9.196

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.