1IE2: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: 1IE2 PDB ID: 1IE2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_A6:U17_A	-3.609	-1.093	-0.275	-4.215	-4.573	-104.122
1	7	A_A7:A15_A	4.81	-5.229	-0.15	10.387	1.705	164.604
1	3	A_C3:G20_A	1.331	-0.475	-0.221	-2.668	3.584	-4.945
1	4	A_C4:G19_A	0.867	-0.207	0.068	-0.94	-1.831	9.069
1	1	A_G1:C22_A	-0.276	-0.038	0.259	4.625	0.934	10.473
1	2	A_G2:C21_A	0.491	-0.05	0.141	1.549	-0.059	6.397
1	5	A_G5:A18_A	6.292	-3.893	0.096	2.624	-0.088	-2.867
1	8	A_U9:A14_A	0.188	0.611	-0.78	29.591	24.402	43.04

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.