1IE2: Base Pair Morphology Step Parameters

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NDB ID: 1IE2 PDB ID: 1IE2

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_A6A7:A15U17_AA	0.323	0.969	2.994	6.585	-1.096	-93.821	-0.645	0.33	2.981	0.75	4.504	-94.003
1	7	AA_A7U9:A14A15_AA	0.023	0.705	4.921	2.276	14.434	161.081	0.305	-0.003	4.935	7.316	-1.154	161.236
1	3	AA_C3C4:G19G20_AA	-0.425	-1.832	2.954	3.203	-1.791	25.123	-3.696	1.811	2.998	-4.089	-7.313	25.385
1	4	AA_C4G5:A18G19_AA	-0.453	0.313	3.967	-10.704	-15.732	53.891	1.392	-0.249	3.771	-16.781	11.418	56.913
1	1	AA_G1G2:C21C22_AA	-0.953	-0.844	3.002	3.959	11.279	33.579	-2.8	2.058	2.475	18.799	-6.599	35.585
1	2	AA_G2C3:G20C21_AA	-0.308	-2.055	2.922	7.147	10.275	30.759	-4.963	1.487	2.03	18.441	-12.828	33.151
1	5	AA_G5A6:U17A18_AA	-5.201	-1.353	3.407	4.589	-1.208	-2.714	28.384	-0.64	5.759	15.341	58.261	-5.466

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.