1IHA: Base Pair Morphology Step Parameters

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NDB ID: AH0018 PDB ID: 1IHA

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_C2U3:G6G7_BB	0.098	-1.33	3.227	2.794	4.988	39.959	-2.47	0.161	3.046	7.254	-4.063	40.35
1	5	AA_C5G6:U3U4_BB	3.225	-1.667	3.472	-0.319	12.403	25.028	-6.245	-6.763	2.356	26.633	0.685	27.891
1	1	AA_G1C2:G7C8_BB	-0.184	-1.957	3.452	-1.492	3.74	33.88	-3.945	0.071	3.229	6.389	2.55	34.112
1	6	AA_G6G7:C2U3_BB	0.176	-1.658	3.508	-2.344	6.106	39.624	-3.135	-0.532	3.213	8.933	3.43	40.138
1	7	AA_G7C8:G1C2_BB	0.102	-1.887	3.349	-1.088	1.376	34.259	-3.418	-0.345	3.268	2.335	1.846	34.302
1	3	AA_U3U4:C5G6_BB	-3.924	-1.965	3.464	-4.022	6.738	20.269	-8.086	8.7	3.351	18.284	10.914	21.72
1	4	AA_U4C5:U4C5_BB	-0.079	-1.885	3.425	0.908	6.283	38.646	-3.568	0.227	3.091	9.415	-1.361	39.145

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.