A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: AR0033  PDB ID: 1IK5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U25_B-0.006-0.1420.222-0.838-13.2774.068
110A_A12:U17_B-0.250.00.3172.676-11.7455.558
16A_C8:G23_B0.081-0.156-0.1481.310.0173.043
112A_C14:G15_B0.472-0.206-0.1738.308-9.188-2.145
111A_CBR13:G16_B0.378-0.101-0.24812.308-14.4480.281
11A_G1:C28_B-0.505-0.1010.006-4.698-3.104-1.458
12A_G2:CBR27_B-0.223-0.192-0.007-5.312-13.976-0.212
17A_G9:U22_B-0.179-0.205-0.242-3.959-3.9980.302
18A_G10:U19_B-2.466-0.4860.206-8.15-3.730.27
13A_U3:A26_B0.156-0.0580.073-1.428-9.256.919
15A_U5:G24_B2.647-0.6540.1517.83-9.03-2.127
19A_U11:A18_B0.022-0.0950.0512.234-11.294.168

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.