1IKD: Base Pair Morphology Step Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: 1IKD PDB ID: 1IKD

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	AA_C5U6:A13G14_AA	-0.208	-0.657	2.844	3.166	12.181	26.351	-3.498	0.983	2.284	24.988	-6.495	29.154
1	7	AA_C7U8:G11G12_AA	-0.855	-0.521	3.968	18.54	15.463	86.471	-0.754	1.067	3.658	11.105	-13.315	89.133
1	1	AA_G1G2:C17C18_AA	0.12	-0.732	3.098	-2.54	11.167	31.627	-2.932	-0.587	2.676	19.699	4.48	33.587
1	2	AA_G2G3:U16C17_AA	0.55	-1.267	2.301	-17.623	2.704	21.05	-3.078	-3.863	1.295	6.166	40.183	27.52
1	3	AA_G3G4:C15U16_AA	-0.937	-1.056	4.473	3.133	32.901	44.229	-3.704	1.263	3.011	38.07	-3.626	54.712
1	4	AA_G4C5:G14C15_AA	-0.041	-0.656	2.481	-0.546	5.52	31.114	-1.963	0.001	2.333	10.189	1.008	31.592
1	6	AA_U6C7:G12A13_AA	-0.074	-0.849	3.139	1.924	10.589	33.114	-2.911	0.395	2.738	17.996	-3.27	34.773

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.