1IPP: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: PDE0144 PDB ID: 1IPP

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	C_DA204:DT219_D	-0.097	-0.203	0.06	10.491	-4.633	-4.546
1	11	C_DA212:DT211_D	0.523	-0.268	-0.233	3.595	-15.914	8.657
1	12	C_DA213:DT210_D	0.052	-0.192	0.336	5.537	-11.85	1.97
1	14	C_DA215:DT208_D	0.453	0.021	-0.391	-27.267	6.017	-1.96
1	16	C_DA217:DT206_D	-0.325	-0.102	0.047	0.745	-10.624	1.434
1	20	C_DA221:DT202_D	0.011	-0.026	-0.017	-0.056	-8.467	8.518
1	4	C_DC205:DG218_D	0.538	-0.22	-0.009	8.5	-18.04	-0.557
1	6	C_DC207:DG216_D	0.639	-0.437	-0.434	-1.441	0.883	-0.155
1	8	C_DC209:DG214_D	0.801	-0.045	-0.058	9.387	-5.626	5.116
1	19	C_DC220:DG203_D	0.007	0.044	0.115	-3.782	-2.942	6.408
1	2	C_DG203:DC220_D	-0.452	-0.032	-0.266	-4.418	-6.254	2.711
1	13	C_DG214:DC209_D	-0.308	-0.149	-0.375	-9.807	-5.702	-2.912
1	15	C_DG216:DC207_D	-0.02	0.035	0.113	-4.275	-6.028	2.668
1	17	C_DG218:DC205_D	-0.413	-0.363	0.331	-1.01	-12.073	-0.761
1	1	C_DT202:DA221_D	-0.186	-0.032	-0.201	-8.662	-13.877	7.567
1	5	C_DT206:DA217_D	0.108	-0.29	-0.219	1.954	-5.309	3.78
1	7	C_DT208:DA215_D	0.11	-0.052	-0.602	24.024	-2.848	0.261
1	9	C_DT210:DA213_D	0.112	-0.219	-0.117	2.074	-11.44	3.207
1	10	C_DT211:DA212_D	-0.275	-0.276	-0.234	-2.258	-7.223	7.542
1	18	C_DT219:DA204_D	0.029	-0.26	0.476	-12.027	-0.52	1.994

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.