A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PDE0144  PDB ID: 1IPP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA204:DT219_D-0.097-0.2030.0610.491-4.633-4.546
111C_DA212:DT211_D0.523-0.268-0.2333.595-15.9148.657
112C_DA213:DT210_D0.052-0.1920.3365.537-11.851.97
114C_DA215:DT208_D0.4530.021-0.391-27.2676.017-1.96
116C_DA217:DT206_D-0.325-0.1020.0470.745-10.6241.434
120C_DA221:DT202_D0.011-0.026-0.017-0.056-8.4678.518
14C_DC205:DG218_D0.538-0.22-0.0098.5-18.04-0.557
16C_DC207:DG216_D0.639-0.437-0.434-1.4410.883-0.155
18C_DC209:DG214_D0.801-0.045-0.0589.387-5.6265.116
119C_DC220:DG203_D0.0070.0440.115-3.782-2.9426.408
12C_DG203:DC220_D-0.452-0.032-0.266-4.418-6.2542.711
113C_DG214:DC209_D-0.308-0.149-0.375-9.807-5.702-2.912
115C_DG216:DC207_D-0.020.0350.113-4.275-6.0282.668
117C_DG218:DC205_D-0.413-0.3630.331-1.01-12.073-0.761
11C_DT202:DA221_D-0.186-0.032-0.201-8.662-13.8777.567
15C_DT206:DA217_D0.108-0.29-0.2191.954-5.3093.78
17C_DT208:DA215_D0.11-0.052-0.60224.024-2.8480.261
19C_DT210:DA213_D0.112-0.219-0.1172.074-11.443.207
110C_DT211:DA212_D-0.275-0.276-0.234-2.258-7.2237.542
118C_DT219:DA204_D0.029-0.260.476-12.027-0.521.994

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.