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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0092  PDB ID: 1J1U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
127B_A514:U508_B-3.854-2.1630.6195.2568.197-97.354
115B_A537:U534_B-4.1360.5-0.811-24.41612.718-136.594
116B_A539:C533_B-4.09-0.7220.90416.503-8.783-12.739
122B_A545:G527_B0.2111.230.254-13.488-16.601-26.335
11B_C501:G573_B0.452-0.1890.15512.958-23.5263.641
12B_C502:G572_B0.264-0.2220.2822.909-15.8261.183
15B_C505:G569_B0.204-0.1350.1182.815-13.2223.421
126B_C513:G523_B0.273-0.2140.065-1.51-1.7935.45
118B_C541:G531_B-0.794-0.1450.0825.504-16.02-19.276
119B_C542:G530_B1.149-0.6660.215-0.324-15.449-1.406
121B_C544:G528_B0.058-0.3410.46-8.755-10.969-5.683
19B_C551:G565_B0.243-0.246-0.0460.546-15.4160.734
13B_G503:C571_B-0.009-0.1510.2950.879-13.490.059
14B_G504:C570_B-0.202-0.1850.1692.241-13.896-0.333
16B_G506:C568_B-0.262-0.1170.1-6.577-16.981.838
17B_G507:C567_B-0.135-0.189-0.244-9.284-7.111-2.148
123B_G510:C526_B-0.527-0.1590.02-5.174-8.8250.346
128B_G515:C549_B0.1363.8940.1186.9855.35152.775
129B_G520:C557_B-0.3290.279-0.221-22.334-24.1172.623
120B_G543:C529_B0.4720.0120.397-5.499-16.8763.231
18B_G550:C566_B-0.166-0.082-0.011-4.634-11.343-0.379
111B_G553:C563_B-0.343-0.207-0.345-6.233-11.751.904
112B_G554:C562_B-0.363-0.1-0.117-8.651-12.311-1.981
124B_U511:A525_B-0.024-0.3420.338-12.144-19.1191.698
125B_U512:A524_B-0.161-0.303-0.327-5.008-8.303-5.615
117B_U540:A532_B-0.692-0.2050.01313.447-22.179.538
110B_U552:G564_B2.333-0.6020.126-4.836-9.7190.846
113B_U555:A559_B4.035-1.9310.264-4.7438.563-100.925
114B_U556:G519_B0.666-5.4620.3217.34417.14-94.099

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.