A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PR0092  PDB ID: 1J1U 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
126BB_A514G515:C549U508_BB1.824-3.2143.3552.5217.514-69.6942.5151.6843.582-6.5532.199-70.087
114BB_A537A539:C533U534_BB2.663-3.4654.865-8.89419.4946.949-5.648-3.8252.79723.1110.54551.353
115BB_A539U540:A532C533_BB0.575-0.9023.493-0.00913.71343.591-2.405-0.7423.08817.9450.01245.597
121BB_A545G510:C526G527_BB-3.036-2.7612.8948.0164.86763.906-2.7533.1182.3464.572-7.5364.518
11BB_C501C502:G572G573_BB-0.485-1.6983.42-4.5849.31733.724-4.1740.1282.90215.6077.67935.242
12BB_C502G503:C571G572_BB-0.232-1.8893.055-1.4813.04328.751-5.4550.2032.03624.7052.80331.548
15BB_C505G506:C568G569_BB0.303-2.0763.2820.00213.66827.97-6.138-0.5662.06626.377-0.00431.071
125BB_C513A514:U508G523_BB-1.339-0.5563.1261.351-4.66364.881-0.3311.2993.129-4.34-1.25765.043
117BB_C541C542:G530G531_BB0.588-1.2313.4331.7315.73743.143-2.229-0.6213.2717.757-2.34143.538
118BB_C542G543:C529G530_BB0.351-1.9933.1590.7149.93626.304-6.115-0.5782.27820.903-1.50128.096
120BB_C544A545:G527G528_BB-0.946-1.8113.2224.264.86633.306-3.8312.2572.7988.392-7.34733.91
19BB_C551U552:G564G565_BB0.291-1.3833.3930.1242.85441.353-2.265-0.3973.2964.035-0.17541.447
13BB_G503G504:C570C571_BB-0.562-1.233.178-0.7194.94734.479-2.7670.8362.9898.2921.20534.828
14BB_G504C505:G569C570_BB0.779-1.283.2020.926.30331.497-3.382-1.2512.91811.465-1.67332.119
16BB_G506G507:C567C568_BB-0.754-1.483.2331.2649.72833.925-3.7751.4172.69116.254-2.11335.274
17BB_G507G550:C566C567_BB0.116-2.0713.138-0.7577.77132.523-4.742-0.3122.58513.6311.32833.423
122BB_G510U511:A525C526_BB-0.499-1.3353.303-2.2967.4937.093-2.9930.4813.01111.6143.5637.883
119BB_G543C544:G528C529_BB-0.258-1.7853.1870.9822.56133.026-3.5410.613.0354.496-1.72433.137
18BB_G550C551:G565C566_BB-0.633-1.533.0920.3281.40934.667-2.7671.1083.0232.364-0.55134.696
111BB_G553G554:C562C563_BB0.941-2.0823.3291.7235.67229.258-5.184-1.4812.93211.086-3.36729.84
112BB_G554U555:A559C562_BB-2.0-2.1723.1852.7311.18991.125-1.5431.4513.1150.833-1.91291.163
123BB_U511U512:A524A525_BB-0.895-0.9422.9444.5046.75632.348-2.6022.22.55711.893-7.92933.325
124BB_U512C513:G523A524_BB1.822-1.4693.3-0.9395.47128.147-4.148-3.8812.90711.1131.90628.678
116BB_U540C541:G531A532_BB-0.708-1.5163.486-8.2768.82734.376-3.704-0.0613.09914.39413.49536.382
110BB_U552G553:C563G564_BB-0.026-1.9293.266.7498.48920.714-7.3322.1052.19521.787-17.32223.353
113BB_U555U556:G519A559_BB2.182-1.7833.49811.9993.69941.325-2.841-1.6223.7945.101-16.54843.11

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.