1J1U: Base Pair Morphology Step Parameters

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NDB ID: PR0092 PDB ID: 1J1U

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	26	BB_A514G515:C549U508_BB	1.824	-3.214	3.355	2.521	7.514	-69.694	2.515	1.684	3.582	-6.553	2.199	-70.087
1	14	BB_A537A539:C533U534_BB	2.663	-3.465	4.865	-8.894	19.49	46.949	-5.648	-3.825	2.797	23.11	10.545	51.353
1	15	BB_A539U540:A532C533_BB	0.575	-0.902	3.493	-0.009	13.713	43.591	-2.405	-0.742	3.088	17.945	0.012	45.597
1	21	BB_A545G510:C526G527_BB	-3.036	-2.761	2.894	8.016	4.867	63.906	-2.753	3.118	2.346	4.572	-7.53	64.518
1	1	BB_C501C502:G572G573_BB	-0.485	-1.698	3.42	-4.584	9.317	33.724	-4.174	0.128	2.902	15.607	7.679	35.242
1	2	BB_C502G503:C571G572_BB	-0.232	-1.889	3.055	-1.48	13.043	28.751	-5.455	0.203	2.036	24.705	2.803	31.548
1	5	BB_C505G506:C568G569_BB	0.303	-2.076	3.282	0.002	13.668	27.97	-6.138	-0.566	2.066	26.377	-0.004	31.071
1	25	BB_C513A514:U508G523_BB	-1.339	-0.556	3.126	1.351	-4.663	64.881	-0.331	1.299	3.129	-4.34	-1.257	65.043
1	17	BB_C541C542:G530G531_BB	0.588	-1.231	3.433	1.731	5.737	43.143	-2.229	-0.621	3.271	7.757	-2.341	43.538
1	18	BB_C542G543:C529G530_BB	0.351	-1.993	3.159	0.714	9.936	26.304	-6.115	-0.578	2.278	20.903	-1.501	28.096
1	20	BB_C544A545:G527G528_BB	-0.946	-1.811	3.222	4.26	4.866	33.306	-3.831	2.257	2.798	8.392	-7.347	33.91
1	9	BB_C551U552:G564G565_BB	0.291	-1.383	3.393	0.124	2.854	41.353	-2.265	-0.397	3.296	4.035	-0.175	41.447
1	3	BB_G503G504:C570C571_BB	-0.562	-1.23	3.178	-0.719	4.947	34.479	-2.767	0.836	2.989	8.292	1.205	34.828
1	4	BB_G504C505:G569C570_BB	0.779	-1.28	3.202	0.92	6.303	31.497	-3.382	-1.251	2.918	11.465	-1.673	32.119
1	6	BB_G506G507:C567C568_BB	-0.754	-1.48	3.233	1.264	9.728	33.925	-3.775	1.417	2.691	16.254	-2.113	35.274
1	7	BB_G507G550:C566C567_BB	0.116	-2.071	3.138	-0.757	7.771	32.523	-4.742	-0.312	2.585	13.631	1.328	33.423
1	22	BB_G510U511:A525C526_BB	-0.499	-1.335	3.303	-2.296	7.49	37.093	-2.993	0.481	3.011	11.614	3.56	37.883
1	19	BB_G543C544:G528C529_BB	-0.258	-1.785	3.187	0.982	2.561	33.026	-3.541	0.61	3.035	4.496	-1.724	33.137
1	8	BB_G550C551:G565C566_BB	-0.633	-1.53	3.092	0.328	1.409	34.667	-2.767	1.108	3.023	2.364	-0.551	34.696
1	11	BB_G553G554:C562C563_BB	0.941	-2.082	3.329	1.723	5.672	29.258	-5.184	-1.481	2.932	11.086	-3.367	29.84
1	12	BB_G554U555:A559C562_BB	-2.0	-2.172	3.185	2.731	1.189	91.125	-1.543	1.451	3.115	0.833	-1.912	91.163
1	23	BB_U511U512:A524A525_BB	-0.895	-0.942	2.944	4.504	6.756	32.348	-2.602	2.2	2.557	11.893	-7.929	33.325
1	24	BB_U512C513:G523A524_BB	1.822	-1.469	3.3	-0.939	5.471	28.147	-4.148	-3.881	2.907	11.113	1.906	28.678
1	16	BB_U540C541:G531A532_BB	-0.708	-1.516	3.486	-8.276	8.827	34.376	-3.704	-0.061	3.099	14.394	13.495	36.382
1	10	BB_U552G553:C563G564_BB	-0.026	-1.929	3.26	6.749	8.489	20.714	-7.332	2.105	2.195	21.787	-17.322	23.353
1	13	BB_U555U556:G519A559_BB	2.182	-1.783	3.498	11.999	3.699	41.325	-2.841	-1.622	3.794	5.101	-16.548	43.11

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.