A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Jan-2021 number of released structures: 11166
Search for released structures

NDB ID: 1J47  PDB ID: 1J47 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_DA106:DT123_C0.018-0.147-0.248-1.95-19.9960.107
18B_DA108:DT121_C0.061-0.1290.193-17.289-3.445-2.687
19B_DA109:DT120_C-0.008-0.0710.62717.37111.068-0.927
110B_DA110:DT119_C-0.063-0.0960.93722.72815.2861.299
112B_DA112:DT117_C0.031-0.154-0.2927.617-19.0862.391
11B_DC101:DG128_C0.047-0.1750.067-4.341-1.681-1.697
12B_DC102:DG127_C0.096-0.2110.118-3.373-13.454-0.656
15B_DC105:DG124_C0.091-0.163-0.0933.678-8.986-1.438
17B_DC107:DG122_C-0.006-0.1480.195-6.713-8.615-2.714
111B_DC111:DG118_C0.068-0.1610.2351.44511.4850.579
113B_DC113:DG116_C0.076-0.1850.018-1.857-15.16-0.694
114B_DC114:DG115_C0.155-0.1740.085-7.571-1.452-0.744
14B_DG104:DC125_C-0.044-0.2010.0028.325-8.039-1.832
13B_DT103:DA126_C-0.145-0.1380.3-5.228-11.669-2.973

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.