A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Jan-2021 number of released structures: 11166
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NDB ID: 1J47  PDB ID: 1J47 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16BB_DA106DC107:DG122DT123_CC0.253-0.1383.725-3.8499.64429.971-2.262-1.2663.45717.9837.17731.68
18BB_DA108DA109:DT120DT121_CC-0.1150.4453.249-5.19613.28323.429-2.471-1.0923.02229.46911.52727.377
19BB_DA109DA110:DT119DT120_CC-0.147-0.14.037-2.7729.27829.096-2.449-0.3983.82317.8545.33530.632
110BB_DA110DC111:DG118DT119_CC-0.519-0.4394.7995.75517.10127.051-5.0752.3723.70332.386-10.89932.423
112BB_DA112DC113:DG116DT117_CC-0.074-0.1023.627-2.87112.00934.267-2.018-0.3253.39819.614.68836.361
11BB_DC101DC102:DG127DG128_CC-0.1190.0073.61.4656.22633.241-1.0930.4653.53510.759-2.53133.834
12BB_DC102DT103:DA126DG127_CC-0.118-0.0983.654-1.5365.35632.985-1.158-0.0773.5959.3492.68233.439
15BB_DC105DA106:DT123DG124_CC-0.0290.2753.8723.3296.2934.788-0.6460.6293.84210.387-5.49735.487
17BB_DC107DA108:DT121DG122_CC-0.3940.13.873-4.18610.51138.348-1.3030.03.79215.5916.20939.922
111BB_DC111DA112:DT117DG118_CC-0.6650.9173.3045.0647.58935.4640.3881.7753.30112.211-8.14836.582
113BB_DC113DC114:DG115DG116_CC-0.1420.23.674-2.27612.25234.23-1.623-0.1343.53920.0123.71836.364
14BB_DG104DC105:DG124DC125_CC0.0320.2573.756-0.0943.3436.052-0.127-0.0663.7635.3820.15136.201
13BB_DT103DG104:DC125DA126_CC0.2090.0363.2233.2930.11535.4870.0420.1313.2290.188-5.38835.635

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.