A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Apr-2021 number of released structures: 11277
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NDB ID: RR0052  PDB ID: 1J5E 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
14A_A10:U24_A120
12A_A26:G558_A911
134A_A32:U552_A120
135A_A33:U551_A120
146A_A55:U368_A221
149A_A60:G107_A60
167A_A109:G324_A1011
191A_A119:U287_A424
1113A_A140:U223_A120
1114A_A141:U222_A120
1116A_A143:G220_A08
1140A_A149:A172_A00
1142A_A151:U170_A424
1143A_A152:C169_A425
1133A_A195:U180_A424
1134A_A196:A179_A45
196A_A243:A282_A45
197A_A246:G281_A911
1168A_A300:U565_A00
168A_A327:U323_A424
169A_A329:C322_A425
176A_A338:G351_A08
1169A_A383:G380_A00
1174A_A389:U375_A120
1178A_A393:U367_A120
1196A_A430:A411_A45
1197A_A431:U429_A323
1198A_A432:G410_A911
1205A_A439:U495_A424
1206A_A440:G494_A1011
1213A_A448:U486_A424
1216A_A452:U480_A424
1217A_A453:C479_A425
1234A_A533:A520_A00
1241A_A563:U884_A221
1257A_A583:G758_A1011
1314A_A611:G629_A08
1317A_A614:U626_A120
1261A_A632:G606_A1011
1269A_A640:U598_A120
1270A_A642:U641_A00
1276A_A648:U591_A120
1282A_A655:U751_A120
1290A_A663:G742_A08
1301A_A675:A715_A00
1302A_A676:G714_A08
1310A_A684:A706_A00
1313A_A687:G703_A1011
1326A_A722:A733_A21
1280A_A753:U652_A424
1336A_A766:U813_A424
1337A_A768:C811_A00
1346A_A780:A802_A60
1347A_A781:U801_A424
1348A_A782:G800_A911
1366A_A860:G869_A1011
1373A_A889:A908_A82
1375A_A892:G906_A1011
17A_A914:G21_A1011
111A_A918:U17_A120
112A_A919:A16_A10
116A_A923:U1393_A120
126A_A935:U1380_A120
128A_A937:C1378_A60
129A_A938:C934_A226
1404A_A978:G1316_A00
1418A_A986:U1219_A120
1429A_A1001:U1040_A120
1431A_A1004:A1035_A00
1436A_A1016:G1013_A00
1448A_A1055:C1200_A425
1484A_A1123:U1150_A10
1494A_A1157:G1178_A610
1478A_A1179:G1156_A610
1423A_A1213:A1046_A21
1389A_A1225:U955_A120
1392A_A1229:U952_A120
1399A_A1236:G945_A08
1504A_A1238:U1301_A424
1505A_A1239:A1299_A00
1510A_A1245:U1292_A120
1513A_A1248:A1289_A00
1515A_A1252:A1285_A21
1519A_A1256:U1278_A00
1405A_A1319:U1315_A424
1407A_A1324:U1313_A120
1412A_A1329:U1308_A120
1530A_A1346:A1375_A82
1532A_A1349:G1373_A1011
1533A_A1350:U1372_A120
1540A_A1357:G1365_A08
1555A_A1413:G1487_A18
1560A_A1418:G1482_A1011
1570A_A1428:U1472_A120
1575A_A1434:G1467_A911
1546A_A1499:C1403_A50
1547A_A1500:C1402_A10
1587A_A1507:U1528_A120
1593A_A1513:U1522_A120
136A_C34:G550_A119
138A_C36:G548_A119
148A_C58:G354_A119
152A_C63:G104_A119
154A_C67:G102_A119
158A_C73:G97_A119
159A_C74:G96_A119
161A_C76:G93_A119
199A_C123:G238_A119
1106A_C131:G231_A119
1107A_C132:G230_A119
1109A_C136:G227_A119
1110A_C137:G226_A119
1141A_C150:A171_A425
1144A_C153:G168_A119
1145A_C154:G167_A119
1146A_C155:G166_A119
1130A_C193:G184_A119
1131A_C194:G183_A119
1120A_C201:G216_A119
192A_C240:G286_A119
193A_C241:G285_A119
194A_C242:G284_A119
195A_C245:C283_A10
1152A_C248:G276_A119
188A_C290:G310_A119
189A_C291:G309_A119
1165A_C295:G302_A119
172A_C334:G319_A119
173A_C335:G318_A119
174A_C336:G317_A119
175A_C337:G316_A119
177A_C339:G350_A119
179A_C341:G348_A119
180A_C342:G347_A119
1171A_C385:G378_A119
1172A_C386:G377_A119
1175A_C390:G371_A119
1180A_C395:G46_A119
1182A_C398:G44_A119
1184A_C400:G42_A119
1185A_C401:G41_A119
1187A_C403:G39_A119
1199A_C433:G409_A119
1201A_C435:G407_A119
1202A_C436:G406_A119
1207A_C442:G492_A119
1208A_C443:G491_A119
1209A_C444:G490_A10
1214A_C449:G484_A00
1218A_C454:A478_A00
1219A_C455:G477_A119
1220A_C456:G476_A119
1221A_C457:G475_A119
1222A_C458:G474_A10
1225A_C501:G544_A119
1227A_C503:G542_A119
1228A_C504:G541_A119
1237A_C507:G524_A119
1238A_C508:A510_A00
1229A_C511:G540_A119
1231A_C513:G538_A119
1232A_C514:G537_A119
1240A_C522:G527_A119
1244A_C569:G881_A119
1260A_C586:G755_A119
1315A_C612:G628_A119
1316A_C613:G627_A119
1318A_C615:G625_A119
1321A_C618:A622_A20
1263A_C634:G604_A119
1271A_C643:G597_A119
1273A_C645:G594_A119
1275A_C647:G592_A119
1279A_C651:G588_A119
1283A_C656:G750_A119
1305A_C679:G711_A119
1306A_C680:G710_A119
1307A_C681:G709_A119
1323A_C689:G698_A119
1329A_C726:G731_A119
1332A_C762:G579_A119
1334A_C764:G577_A119
1339A_C770:G809_A119
1345A_C779:G803_A119
1349A_C783:G799_A119
1350A_C784:G798_A119
1354A_C817:G1529_A119
1247A_C822:G878_A119
1249A_C824:G876_A119
1251A_C826:G874_A119
1355A_C848:G838_A10
1356A_C849:G837_A119
1363A_C856:G830_A119
1364A_C857:G829_A119
1368A_C862:G867_A119
1376A_C893:U244_A118
1379A_C896:G903_A119
1380A_C897:G902_A119
117A_C924:G1392_A119
122A_C930:G1387_A119
123A_C931:G1386_A119
124A_C932:G1385_A119
127A_C936:G1379_A119
1383A_C940:G1343_A119
1402A_C962:G973_A119
1415A_C979:C1317_A00
1416A_C984:G1221_A119
1417A_C985:G1220_A119
1421A_C989:G1216_A119
1422A_C990:G1215_A119
1427A_C999:G1042_A119
1438A_C1018:G1011_A119
1439A_C1019:G1010_A119
1432A_C1027:G1034_A119
1433A_C1028:G1033_A10
1434A_C1029:G1032_A00
1435A_C1030:G1031_A119
1446A_C1051:G1207_A119
1452A_C1059:G1198_A119
1453A_C1060:G1197_A119
1456A_C1063:G1193_A119
1458A_C1066:A1191_A425
1460A_C1069:G1106_A119
1462A_C1071:G1104_A119
1466A_C1075:G1082_A119
1467A_C1076:G1081_A119
1474A_C1113:G1187_A119
1475A_C1114:G1186_A119
1476A_C1115:G1185_A119
1477A_C1116:G1184_A119
1479A_C1118:G1155_A119
1480A_C1119:G1154_A119
1488A_C1128:G1144_A10
1490A_C1132:G1142_A10
1495A_C1158:G1181_A10
1497A_C1161:G1175_A119
1498A_C1162:G1174_A119
1499A_C1163:G1173_A119
1501A_C1165:G1171_A119
1390A_C1226:G954_A10
1391A_C1228:G953_A119
1393A_C1230:G951_A119
1397A_C1234:G947_A119
1400A_C1237:G1337_A119
1507A_C1242:G1295_A119
1508A_C1243:G1294_A119
1509A_C1244:G1293_A119
1511A_C1246:G1291_A119
1514A_C1249:A1288_A425
1517A_C1254:G1283_A10
1521A_C1259:G1276_A119
1522A_C1260:G1274_A00
1523A_C1262:G1273_A119
1524A_C1263:G1272_A119
1525A_C1264:G1271_A119
1527A_C1303:G1334_A119
1408A_C1325:G1312_A119
1409A_C1326:G1311_A119
1410A_C1327:G1310_A119
1411A_C1328:G1309_A119
1535A_C1352:G1370_A119
1537A_C1354:G1368_A119
1551A_C1409:G1491_A00
1553A_C1411:G1489_A119
1554A_C1412:G1488_A119
1562A_C1420:G1480_A10
1566A_C1424:G1476_A10
1568A_C1426:G1474_A119
1571A_C1429:G1471_A119
1572A_C1430:G1470_A119
1573A_C1431:G1469_A119
1578A_C1437:G1464_A119
1580A_C1439:G1462_A119
1581A_C1440:G1461_A119
1584A_C1448:G1455_A119
1585A_C1449:G1454_A119
1544A_C1496:G1405_A119
1548A_C1501:G1401_A119
1589A_C1509:G1526_A119
1594A_C1514:G1521_A119
1595A_C1515:G1520_A119
11A_G7:U560_A00
13A_G9:C25_A119
15A_G11:C23_A119
130A_G27:C556_A119
131A_G28:C555_A119
132A_G29:C554_A119
137A_G35:C549_A119
147A_G57:C355_A119
150A_G61:C106_A119
153A_G66:C103_A119
155A_G68:A101_A08
156A_G69:C99_A119
157A_G70:U98_A128
160A_G75:U95_A128
162A_G77:C92_A119
163A_G78:C91_A119
164A_G79:U90_A128
165A_G80:C89_A119
182A_G111:G331_A00
183A_G112:A315_A08
184A_G113:C314_A119
186A_G115:C312_A119
198A_G122:U239_A028
1100A_G124:C237_A119
1102A_G126:C235_A119
1103A_G127:C234_A119
1104A_G128:C233_A119
1121A_G129A:C190C_A20
1111A_G138:C225_A119
1112A_G139:C224_A119
1115A_G142:C221_A119
1135A_G144:C178_A119
1136A_G145:C177_A119
1137A_G146:C176_A119
1138A_G147:C175_A119
1139A_G148:C174_A119
1147A_G156:C165_A119
1148A_G157:U164_A128
1149A_G158:C163_A10
1150A_G159:A162_A00
1132A_G181:U182_A00
1122A_G190G:C190B_A119
1123A_G190H:C190A_A119
1124A_G190I:C190_A119
1126A_G190K:C188_A119
1128A_G191:C186_A119
1117A_G198:C219_A119
1118A_G199:C218_A119
1119A_G200:C217_A119
1151A_G247:C277_A119
1156A_G254:C272_A119
1157A_G255:C271_A119
1159A_G257:C269_A119
1160A_G258:C268_A119
1161A_G259:C267_A119
1162A_G260:G265_A00
187A_G289:C311_A119
190A_G292:C308_A119
1163A_G293:U304_A128
1167A_G299:G566_A06
170A_G332:A321_A18
171A_G333:C320_A119
144A_G357:C54_A119
141A_G361:C47_A119
1170A_G384:C379_A119
1176A_G391:C370_A119
1177A_G392:C369_A119
1179A_G394:C366_A50
1181A_G396:U45_A128
1183A_G399:C43_A119
1186A_G402:C40_A119
1190A_G423:U420_A20
1191A_G424:C419_A119
1192A_G425:C418_A119
1193A_G426:C417_A119
1195A_G428:A415_A00
1204A_G438:A497_A00
1210A_G445:C489_A119
1211A_G446:C488_A119
1212A_G447:A487_A1011
1215A_G450:C483_A119
1223A_G459:A463_A911
1224A_G500:C545_A119
1226A_G502:C543_A119
1235A_G505:C526_A119
1236A_G506:C525_A119
1233A_G515:C536_A119
1239A_G521:C528_A119
1242A_G567:C883_A119
1243A_G568:C882_A119
1254A_G570:C866_A119
1245A_G575:C880_A119
1256A_G581:G760_A00
1258A_G584:U757_A028
1259A_G585:C756_A119
1319A_G616:C624_A10
1320A_G617:C623_A119
1262A_G633:U605_A128
1264A_G635:U603_A128
1266A_G637:C601_A119
1267A_G638:C600_A119
1268A_G639:C599_A119
1272A_G644:C596_A119
1277A_G649:C590_A119
1278A_G650:C589_A119
1281A_G654:C754_A119
1284A_G657:C749_A119
1285A_G658:C747_A119
1287A_G660:C745_A119
1288A_G661:C744_A119
1289A_G662:U743_A028
1291A_G664:G741_A00
1292A_G666:U740_A128
1293A_G667:C739_A119
1294A_G668:C738_A119
1296A_G670:C736_A119
1297A_G671:C735_A119
1299A_G673:C717_A119
1300A_G674:A716_A18
1308A_G682:C708_A119
1309A_G683:C707_A119
1311A_G685:U705_A00
1322A_G688:C699_A119
1324A_G690:U697_A00
1325A_G691:A696_A1011
1327A_G724:A665_A09
1328A_G725:C732_A119
1330A_G727:G730_A00
1331A_G761:U580_A128
1333A_G763:C578_A119
1335A_G765:A816_A00
1338A_G769:C810_A119
1340A_G771:C808_A119
1342A_G773:C806_A119
1343A_G774:C805_A119
1344A_G778:U804_A128
1351A_G785:C797_A119
1352A_G786:C796_A119
1246A_G821:C879_A119
1248A_G823:C877_A119
1250A_G825:C875_A119
1358A_G851:U835_A128
1359A_G852:C834_A119
1360A_G853:U833_A128
1361A_G854:C832_A119
1362A_G855:U831_A128
1365A_G858:A828_A911
1367A_G861:C868_A119
1369A_G885:C912_A119
1370A_G886:U911_A128
1371A_G887:C910_A119
1372A_G888:A909_A911
1377A_G894:U905_A128
1378A_G895:C904_A119
1381A_G898:A901_A00
19A_G916:C19_A119
110A_G917:C18_A119
115A_G922:C1395_A119
118A_G925:U1391_A128
119A_G927:U1390_A128
120A_G928:C1389_A119
121A_G929:C1388_A119
125A_G933:C1384_A119
1382A_G939:C1344_A119
1384A_G941:C1342_A119
1385A_G942:U1341_A128
1387A_G944:A1339_A100
1403A_G963:C972_A119
1419A_G987:C1218_A119
1420A_G988:C1217_A119
1424A_G993:C1045_A00
1426A_G998:C1043_A10
1430A_G1003A:C1038_A50
1437A_G1017:U1012_A128
1441A_G1021:C1008_A119
1442A_G1022:G1023_A00
1443A_G1047:C1210_A119
1444A_G1048:C1209_A119
1445A_G1050:C1208_A119
1450A_G1057:C1203_A119
1451A_G1058:U1199_A028
1454A_G1061:C1195_A119
1457A_G1064:C1192_A00
1459A_G1068:C1107_A119
1463A_G1072:C1103_A119
1465A_G1074:U1083_A128
1468A_G1077:A1080_A00
1470A_G1087:C1098_A119
1471A_G1088:C1097_A119
1472A_G1089:C1096_A119
1481A_G1120:C1153_A119
1485A_G1124:C1149_A10
1487A_G1127:C1147_A50
1489A_G1131:G1143_A00
1491A_G1133:C1141_A10
1492A_G1134:C1140_A119
1496A_G1160:A1176_A08
1500A_G1164:C1172_A119
1502A_G1166:A1169_A00
1503A_G1224:C1362_A119
1394A_G1231:U950_A128
1396A_G1233:C948_A119
1506A_G1241:C1296_A119
1516A_G1253:C1284_A119
1518A_G1255:C1282_A119
1520A_G1258:C1277_A119
1526A_G1265:C1270_A119
1528A_G1304:A1333_A911
1406A_G1323:C1314_A119
1414A_G1331:A1306_A911
1536A_G1353:C1369_A119
1538A_G1355:C1367_A119
1539A_G1356:C1366_A119
1552A_G1410:C1490_A119
1557A_G1415:U1485_A028
1558A_G1416:C1484_A119
1559A_G1417:A1483_A100
1561A_G1419:U1481_A128
1563A_G1421:C1479_A10
1564A_G1422:C1478_A119
1565A_G1423:C1477_A10
1574A_G1432:A1468_A100
1576A_G1435:C1466_A119
1579A_G1438:C1463_A119
1582A_G1441:A1460_A911
1583A_G1447:C1459_A119
1542A_G1494:C1407_A119
1545A_G1497:C1404_A119
1549A_G1504:C1399_A119
1550A_G1505:A1502_A00
1588A_G1508:C1527_A119
1591A_G1511:C1524_A119
16A_U12:G22_A028
18A_U13:U20_A00
133A_U30:A553_A120
139A_U37:A397_A221
140A_U49:U365_A00
145A_U56:A356_A120
151A_U62:G105_A128
166A_U81:A88_A00
185A_U114:A313_A120
1101A_U125:G236_A128
1105A_U129:G232_A128
1108A_U133:U229_A116
1125A_U190J:G189_A128
1127A_U190L:C187_A00
1129A_U192:A185_A120
1153A_U249:G275_A128
1154A_U252:A274_A120
1155A_U253:A273_A120
1158A_U256:A270_A120
1164A_U294:A303_A120
1166A_U296:G301_A028
178A_U340:A349_A120
181A_U343:G346_A20
143A_U358:A53_A120
142A_U359:G52_A128
1173A_U387:G376_A128
1188A_U404:U498_A30
1189A_U405:A499_A323
1194A_U427:G416_A028
1200A_U434:A408_A120
1203A_U437:A496_A424
1230A_U512:A539_A120
1255A_U571:A865_A120
1265A_U636:A602_A120
1274A_U646:G593_A128
1286A_U659:A746_A120
1295A_U669:A737_A120
1298A_U672:G734_A128
1303A_U677:G713_A00
1304A_U678:A712_A120
1312A_U686:A704_A424
1341A_U772:A807_A120
1353A_U788:A794_A00
1253A_U820:A873_A323
1252A_U827:A872_A221
1357A_U850:G836_A028
1374A_U891:A907_A424
113A_U920:G15_A128
114A_U921:A1396_A120
1386A_U943:A1340_A120
1388A_U960:U956_A213
1401A_U961:A1201_A00
1425A_U997:A1044_A120
1428A_U1000:A1041_A120
1440A_U1020:G1009_A028
1447A_U1052:G1206_A028
1449A_U1056:A1204_A120
1455A_U1062:U1194_A116
1461A_U1070:A1105_A120
1464A_U1073:A1102_A120
1469A_U1086:G1099_A00
1473A_U1090:U1095_A116
1482A_U1121:A1152_A120
1483A_U1122:A1151_A120
1486A_U1126:U1148_A00
1493A_U1135:G1138_A00
1395A_U1232:A949_A120
1398A_U1235:A946_A120
1512A_U1247:G1290_A028
1413A_U1330:U1307_A116
1529A_U1345:U1376_A213
1531A_U1348:A1374_A424
1534A_U1351:G1371_A028
1541A_U1358:A1363_A221
1556A_U1414:G1486_A128
1567A_U1425:G1475_A128
1569A_U1427:A1473_A120
1577A_U1436:C1465_A00
1586A_U1450:G1453_A20
1543A_U1495:U1406_A00
1590A_U1510:G1525_A128
1592A_U1512:G1523_A128

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)