A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: AH0019  PDB ID: 1JB8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A2:DT19_B0.005-0.1980.1937.935-11.3075.142
13A_A3:DT18_B0.042-0.0360.25411.878-18.422.096
14A_A4:DT17_B-0.26-0.189-0.1122.38-16.97714.072
16A_A6:DT15_B0.708-0.234-0.226-9.277-4.9595.663
17A_A7:DT14_B0.189-0.261-0.535-14.17-6.7834.615
18A_A8:DT13_B0.119-0.394-0.286-3.829-4.525-0.439
19A_A9:DT12_B0.169-0.2930.1625.574-1.230.446
11A_C1:DG20_B-0.268-0.035-0.025-4.355-6.1042.948
15A_G5:DC16_B-0.363-0.294-0.204-10.198-2.594-0.465
110A_G10:DC11_B-0.344-0.174-0.0111.471.3862.814

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.