1JB8: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: AH0019 PDB ID: 1JB8

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A2:DT19_B	0.005	-0.198	0.193	7.935	-11.307	5.142
1	3	A_A3:DT18_B	0.042	-0.036	0.254	11.878	-18.42	2.096
1	4	A_A4:DT17_B	-0.26	-0.189	-0.112	2.38	-16.977	14.072
1	6	A_A6:DT15_B	0.708	-0.234	-0.226	-9.277	-4.959	5.663
1	7	A_A7:DT14_B	0.189	-0.261	-0.535	-14.17	-6.783	4.615
1	8	A_A8:DT13_B	0.119	-0.394	-0.286	-3.829	-4.525	-0.439
1	9	A_A9:DT12_B	0.169	-0.293	0.162	5.574	-1.23	0.446
1	1	A_C1:DG20_B	-0.268	-0.035	-0.025	-4.355	-6.104	2.948
1	5	A_G5:DC16_B	-0.363	-0.294	-0.204	-10.198	-2.594	-0.465
1	10	A_G10:DC11_B	-0.344	-0.174	-0.01	11.47	1.386	2.814

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.