1JB8: Base Pair Morphology Step Parameters

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NDB ID: AH0019 PDB ID: 1JB8

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_A2A3:DT18DT19_BB	0.285	-0.642	3.13	-1.074	-3.478	32.811	-0.559	-0.678	3.169	-6.134	1.893	33.007
1	3	AA_A3A4:DT17DT18_BB	0.758	-1.206	3.52	0.21	7.883	31.394	-3.606	-1.322	3.137	14.287	-0.38	32.345
1	4	AA_A4G5:DC16DT17_BB	-1.832	-1.316	3.388	-7.519	14.654	35.44	-3.781	1.818	2.955	22.627	11.61	38.968
1	6	AA_A6A7:DT14DT15_BB	0.729	-1.985	3.509	7.204	7.585	26.656	-5.776	0.195	2.938	15.703	-14.915	28.6
1	7	AA_A7A8:DT13DT14_BB	0.02	-1.92	3.195	-1.509	1.991	28.862	-4.26	-0.359	3.054	3.984	3.02	28.968
1	8	AA_A8A9:DT12DT13_BB	-0.339	-1.827	3.096	-2.559	0.287	28.174	-3.801	0.132	3.095	0.588	5.242	28.289
1	9	AA_A9G10:DC11DT12_BB	0.686	-1.919	3.205	2.493	-1.201	26.024	-3.912	-0.837	3.339	-2.659	-5.516	26.168
1	1	AA_C1A2:DT19DG20_BB	0.723	-0.011	6.406	-2.022	2.787	13.668	-5.139	-6.642	6.108	11.473	8.323	14.093
1	5	AA_G5A6:DT15DC16_BB	0.683	-1.618	3.332	3.882	9.375	36.186	-3.704	-0.57	2.894	14.741	-6.103	37.536

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.