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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0220
PDB ID:
1JEY
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
7
C_DA7:DT28_D
0.178
0.078
0.091
19.225
-10.686
-2.376
1
12
C_DA12:DT23_D
0.166
-0.001
-0.12
7.236
3.369
-5.012
1
18
C_DC18:DG4_D
0.092
-0.001
-0.143
-1.022
8.721
-3.72
1
1
C_DG1:DC34_D
-0.196
-0.437
-1.853
-18.056
-2.808
2.518
1
8
C_DG8:DC27_D
-0.171
0.027
0.319
13.905
-2.855
4.141
1
15
C_DG15:DC7_D
0.077
-0.061
0.392
-4.508
-8.411
-4.521
1
16
C_DG16:DC6_D
0.048
-0.091
-0.719
-3.031
7.267
-4.168
1
17
C_DG17:DC5_D
0.155
-0.301
-1.29
-5.22
13.105
-11.943
1
2
C_DT2:DA33_D
0.147
-0.229
-0.464
5.004
-21.745
8.776
1
3
C_DT3:DA32_D
-0.001
-0.263
-0.915
0.619
-8.892
8.657
1
4
C_DT4:DA31_D
-0.153
-0.056
-0.565
-3.852
-7.881
0.885
1
5
C_DT5:DA30_D
-0.19
-0.138
-1.176
14.922
-3.39
-0.044
1
6
C_DT6:DA29_D
-0.068
-0.114
-1.466
33.514
-4.047
2.361
1
9
C_DT9:DA26_D
-0.064
-0.181
-0.56
3.584
-8.798
3.99
1
10
C_DT10:DA25_D
-0.143
0.04
0.326
-9.176
-5.336
-7.139
1
11
C_DT11:DA24_D
-0.131
0.045
-0.549
3.718
9.69
-11.824
1
13
C_DT13:DA22_D
-0.057
0.106
-0.44
16.324
-22.498
-8.59
1
14
C_DT14:DA21_D
-0.072
-0.005
-0.116
6.208
-26.482
-4.818
1
19
D_DA8:DT20_D
0.061
0.045
-0.303
-6.937
-15.367
-4.974
1
21
D_DC10:DG18_D
0.169
-0.073
-0.215
10.254
-3.232
-2.809
1
20
D_DG9:DC19_D
-0.166
-0.008
-0.973
-17.981
-2.929
-1.241
1
22
D_DT11:DA17_D
-0.079
0.009
0.283
9.131
3.825
-9.928
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.