1JEY: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PD0220 PDB ID: 1JEY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	C_DA7:DT28_D	0.178	0.078	0.091	19.225	-10.686	-2.376
1	12	C_DA12:DT23_D	0.166	-0.001	-0.12	7.236	3.369	-5.012
1	18	C_DC18:DG4_D	0.092	-0.001	-0.143	-1.022	8.721	-3.72
1	1	C_DG1:DC34_D	-0.196	-0.437	-1.853	-18.056	-2.808	2.518
1	8	C_DG8:DC27_D	-0.171	0.027	0.319	13.905	-2.855	4.141
1	15	C_DG15:DC7_D	0.077	-0.061	0.392	-4.508	-8.411	-4.521
1	16	C_DG16:DC6_D	0.048	-0.091	-0.719	-3.031	7.267	-4.168
1	17	C_DG17:DC5_D	0.155	-0.301	-1.29	-5.22	13.105	-11.943
1	2	C_DT2:DA33_D	0.147	-0.229	-0.464	5.004	-21.745	8.776
1	3	C_DT3:DA32_D	-0.001	-0.263	-0.915	0.619	-8.892	8.657
1	4	C_DT4:DA31_D	-0.153	-0.056	-0.565	-3.852	-7.881	0.885
1	5	C_DT5:DA30_D	-0.19	-0.138	-1.176	14.922	-3.39	-0.044
1	6	C_DT6:DA29_D	-0.068	-0.114	-1.466	33.514	-4.047	2.361
1	9	C_DT9:DA26_D	-0.064	-0.181	-0.56	3.584	-8.798	3.99
1	10	C_DT10:DA25_D	-0.143	0.04	0.326	-9.176	-5.336	-7.139
1	11	C_DT11:DA24_D	-0.131	0.045	-0.549	3.718	9.69	-11.824
1	13	C_DT13:DA22_D	-0.057	0.106	-0.44	16.324	-22.498	-8.59
1	14	C_DT14:DA21_D	-0.072	-0.005	-0.116	6.208	-26.482	-4.818
1	19	D_DA8:DT20_D	0.061	0.045	-0.303	-6.937	-15.367	-4.974
1	21	D_DC10:DG18_D	0.169	-0.073	-0.215	10.254	-3.232	-2.809
1	20	D_DG9:DC19_D	-0.166	-0.008	-0.973	-17.981	-2.929	-1.241
1	22	D_DT11:DA17_D	-0.079	0.009	0.283	9.131	3.825	-9.928

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.