A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD0220  PDB ID: 1JEY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17C_DA7:DT28_D0.1780.0780.09119.225-10.686-2.376
112C_DA12:DT23_D0.166-0.001-0.127.2363.369-5.012
118C_DC18:DG4_D0.092-0.001-0.143-1.0228.721-3.72
11C_DG1:DC34_D-0.196-0.437-1.853-18.056-2.8082.518
18C_DG8:DC27_D-0.1710.0270.31913.905-2.8554.141
115C_DG15:DC7_D0.077-0.0610.392-4.508-8.411-4.521
116C_DG16:DC6_D0.048-0.091-0.719-3.0317.267-4.168
117C_DG17:DC5_D0.155-0.301-1.29-5.2213.105-11.943
12C_DT2:DA33_D0.147-0.229-0.4645.004-21.7458.776
13C_DT3:DA32_D-0.001-0.263-0.9150.619-8.8928.657
14C_DT4:DA31_D-0.153-0.056-0.565-3.852-7.8810.885
15C_DT5:DA30_D-0.19-0.138-1.17614.922-3.39-0.044
16C_DT6:DA29_D-0.068-0.114-1.46633.514-4.0472.361
19C_DT9:DA26_D-0.064-0.181-0.563.584-8.7983.99
110C_DT10:DA25_D-0.1430.040.326-9.176-5.336-7.139
111C_DT11:DA24_D-0.1310.045-0.5493.7189.69-11.824
113C_DT13:DA22_D-0.0570.106-0.4416.324-22.498-8.59
114C_DT14:DA21_D-0.072-0.005-0.1166.208-26.482-4.818
119D_DA8:DT20_D0.0610.045-0.303-6.937-15.367-4.974
121D_DC10:DG18_D0.169-0.073-0.21510.254-3.232-2.809
120D_DG9:DC19_D-0.166-0.008-0.973-17.981-2.929-1.241
122D_DT11:DA17_D-0.0790.0090.2839.1313.825-9.928

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.