1JEY: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

Search for released structures

NDB ID: PD0220 PDB ID: 1JEY

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	CC_DA7DG8:DC27DT28_DD	0.678	-0.607	3.205	-3.967	0.888	36.98	-1.066	-1.573	3.104	1.395	6.231	37.195
1	12	CC_DA12DT13:DA22DT23_DD	-1.114	-0.087	2.98	1.527	-5.58	29.054	0.898	2.471	2.885	-10.986	-3.005	29.612
1	1	CC_DG1DT2:DA33DC34_DD	-0.433	0.777	2.903	-5.289	-0.953	39.685	1.232	0.091	2.916	-1.396	7.748	40.033
1	8	CC_DG8DT9:DA26DC27_DD	-0.307	-1.035	3.467	6.296	1.018	29.766	-2.185	1.902	3.298	1.954	-12.082	30.427
1	14	CC_DG15DG16:DC6DC7_DD	0.552	0.042	3.366	9.658	-5.825	36.527	0.837	0.438	3.355	-9.032	-14.975	38.172
1	15	CC_DG16DG17:DC5DC6_DD	-1.011	0.779	3.877	1.629	3.809	31.115	0.587	2.234	3.885	7.061	-3.021	31.382
1	16	CC_DG17DC18:DG4DC5_DD	1.155	-0.711	3.54	-5.16	5.514	34.276	-2.041	-2.723	3.189	9.218	8.625	35.074
1	2	CC_DT2DT3:DA32DA33_DD	0.452	0.989	3.169	4.158	3.081	42.908	1.046	-0.212	3.257	4.193	-5.659	43.204
1	3	CC_DT3DT4:DA31DA32_DD	-0.772	0.595	3.398	-3.698	9.759	32.747	-0.642	0.682	3.491	16.786	6.361	34.326
1	4	CC_DT4DT5:DA30DA31_DD	0.216	0.152	2.675	2.711	1.645	35.297	0.051	-0.028	2.688	2.706	-4.461	35.435
1	5	CC_DT5DT6:DA29DA30_DD	0.375	0.58	2.867	1.547	4.249	33.356	0.385	-0.424	2.931	7.36	-2.68	33.652
1	6	CC_DT6DA7:DT28DA29_DD	-0.556	0.562	3.991	-7.695	4.253	39.594	0.219	-0.268	4.061	6.187	11.192	40.52
1	9	CC_DT9DT10:DA25DA26_DD	-0.638	-1.17	3.631	-6.073	5.585	33.053	-2.977	0.025	3.453	9.63	10.472	34.039
1	10	CC_DT10DT11:DA24DA25_DD	0.422	0.386	2.881	4.362	-5.995	33.591	1.477	-0.115	2.803	-10.218	-7.435	34.376
1	11	CC_DT11DA12:DT23DA24_DD	0.344	0.763	3.298	-2.5	-3.078	38.364	1.534	-0.829	3.202	-4.668	3.792	38.561
1	13	CC_DT13DT14:DA21DA22_DD	0.613	-0.286	3.22	0.546	7.667	39.57	-1.263	-0.83	3.121	11.197	-0.798	40.281
1	17	DD_DA8DG9:DC19DT20_DD	0.309	0.614	3.696	3.302	3.362	32.009	0.423	0.114	3.752	6.056	-5.948	32.345
1	19	DD_DC10DT11:DA17DG18_DD	0.055	0.248	3.588	-0.019	2.281	34.409	0.03	-0.097	3.596	3.85	0.032	34.482
1	18	DD_DG9DC10:DG18DC19_DD	-0.651	0.887	2.44	-5.837	-0.451	30.039	1.75	0.353	2.506	-0.86	11.129	30.591

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.