A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD0220  PDB ID: 1JEY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17CC_DA7DG8:DC27DT28_DD0.678-0.6073.205-3.9670.88836.98-1.066-1.5733.1041.3956.23137.195
112CC_DA12DT13:DA22DT23_DD-1.114-0.0872.981.527-5.5829.0540.8982.4712.885-10.986-3.00529.612
11CC_DG1DT2:DA33DC34_DD-0.4330.7772.903-5.289-0.95339.6851.2320.0912.916-1.3967.74840.033
18CC_DG8DT9:DA26DC27_DD-0.307-1.0353.4676.2961.01829.766-2.1851.9023.2981.954-12.08230.427
114CC_DG15DG16:DC6DC7_DD0.5520.0423.3669.658-5.82536.5270.8370.4383.355-9.032-14.97538.172
115CC_DG16DG17:DC5DC6_DD-1.0110.7793.8771.6293.80931.1150.5872.2343.8857.061-3.02131.382
116CC_DG17DC18:DG4DC5_DD1.155-0.7113.54-5.165.51434.276-2.041-2.7233.1899.2188.62535.074
12CC_DT2DT3:DA32DA33_DD0.4520.9893.1694.1583.08142.9081.046-0.2123.2574.193-5.65943.204
13CC_DT3DT4:DA31DA32_DD-0.7720.5953.398-3.6989.75932.747-0.6420.6823.49116.7866.36134.326
14CC_DT4DT5:DA30DA31_DD0.2160.1522.6752.7111.64535.2970.051-0.0282.6882.706-4.46135.435
15CC_DT5DT6:DA29DA30_DD0.3750.582.8671.5474.24933.3560.385-0.4242.9317.36-2.6833.652
16CC_DT6DA7:DT28DA29_DD-0.5560.5623.991-7.6954.25339.5940.219-0.2684.0616.18711.19240.52
19CC_DT9DT10:DA25DA26_DD-0.638-1.173.631-6.0735.58533.053-2.9770.0253.4539.6310.47234.039
110CC_DT10DT11:DA24DA25_DD0.4220.3862.8814.362-5.99533.5911.477-0.1152.803-10.218-7.43534.376
111CC_DT11DA12:DT23DA24_DD0.3440.7633.298-2.5-3.07838.3641.534-0.8293.202-4.6683.79238.561
113CC_DT13DT14:DA21DA22_DD0.613-0.2863.220.5467.66739.57-1.263-0.833.12111.197-0.79840.281
117DD_DA8DG9:DC19DT20_DD0.3090.6143.6963.3023.36232.0090.4230.1143.7526.056-5.94832.345
119DD_DC10DT11:DA17DG18_DD0.0550.2483.588-0.0192.28134.4090.03-0.0973.5963.850.03234.482
118DD_DG9DC10:DG18DC19_DD-0.6510.8872.44-5.837-0.45130.0391.750.3532.506-0.8611.12930.591

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.