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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0220
PDB ID:
1JEY
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
7
CC_DA7DG8:DC27DT28_DD
0.678
-0.607
3.205
-3.967
0.888
36.98
-1.066
-1.573
3.104
1.395
6.231
37.195
1
12
CC_DA12DT13:DA22DT23_DD
-1.114
-0.087
2.98
1.527
-5.58
29.054
0.898
2.471
2.885
-10.986
-3.005
29.612
1
1
CC_DG1DT2:DA33DC34_DD
-0.433
0.777
2.903
-5.289
-0.953
39.685
1.232
0.091
2.916
-1.396
7.748
40.033
1
8
CC_DG8DT9:DA26DC27_DD
-0.307
-1.035
3.467
6.296
1.018
29.766
-2.185
1.902
3.298
1.954
-12.082
30.427
1
14
CC_DG15DG16:DC6DC7_DD
0.552
0.042
3.366
9.658
-5.825
36.527
0.837
0.438
3.355
-9.032
-14.975
38.172
1
15
CC_DG16DG17:DC5DC6_DD
-1.011
0.779
3.877
1.629
3.809
31.115
0.587
2.234
3.885
7.061
-3.021
31.382
1
16
CC_DG17DC18:DG4DC5_DD
1.155
-0.711
3.54
-5.16
5.514
34.276
-2.041
-2.723
3.189
9.218
8.625
35.074
1
2
CC_DT2DT3:DA32DA33_DD
0.452
0.989
3.169
4.158
3.081
42.908
1.046
-0.212
3.257
4.193
-5.659
43.204
1
3
CC_DT3DT4:DA31DA32_DD
-0.772
0.595
3.398
-3.698
9.759
32.747
-0.642
0.682
3.491
16.786
6.361
34.326
1
4
CC_DT4DT5:DA30DA31_DD
0.216
0.152
2.675
2.711
1.645
35.297
0.051
-0.028
2.688
2.706
-4.461
35.435
1
5
CC_DT5DT6:DA29DA30_DD
0.375
0.58
2.867
1.547
4.249
33.356
0.385
-0.424
2.931
7.36
-2.68
33.652
1
6
CC_DT6DA7:DT28DA29_DD
-0.556
0.562
3.991
-7.695
4.253
39.594
0.219
-0.268
4.061
6.187
11.192
40.52
1
9
CC_DT9DT10:DA25DA26_DD
-0.638
-1.17
3.631
-6.073
5.585
33.053
-2.977
0.025
3.453
9.63
10.472
34.039
1
10
CC_DT10DT11:DA24DA25_DD
0.422
0.386
2.881
4.362
-5.995
33.591
1.477
-0.115
2.803
-10.218
-7.435
34.376
1
11
CC_DT11DA12:DT23DA24_DD
0.344
0.763
3.298
-2.5
-3.078
38.364
1.534
-0.829
3.202
-4.668
3.792
38.561
1
13
CC_DT13DT14:DA21DA22_DD
0.613
-0.286
3.22
0.546
7.667
39.57
-1.263
-0.83
3.121
11.197
-0.798
40.281
1
17
DD_DA8DG9:DC19DT20_DD
0.309
0.614
3.696
3.302
3.362
32.009
0.423
0.114
3.752
6.056
-5.948
32.345
1
19
DD_DC10DT11:DA17DG18_DD
0.055
0.248
3.588
-0.019
2.281
34.409
0.03
-0.097
3.596
3.85
0.032
34.482
1
18
DD_DG9DC10:DG18DC19_DD
-0.651
0.887
2.44
-5.837
-0.451
30.039
1.75
0.353
2.506
-0.86
11.129
30.591
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.