A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Jan-2021 number of released structures: 11166
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NDB ID: PD0221  PDB ID: 1JFI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16D_DA607:DT713_E0.2270.044-0.001-35.59714.49311.049
18D_DA609:DT711_E0.081-0.277-0.69-1.738-0.482-2.611
19D_DA610:DT710_E0.25-0.1350.20221.6696.0320.723
110D_DA611:DT709_E-0.233-0.077-0.17127.278-2.2570.681
111D_DA612:DT708_E0.058-0.0170.18237.686-8.2857.902
14D_DC605:DG715_E0.018-0.1160.228-10.704-4.881-2.958
115D_DC616:DG704_E-0.013-0.043-0.146-8.172-0.7493.888
117D_DC618:DG702_E-0.9470.251-0.66.889-6.582.952
12D_DG603:DC717_E0.1840.0080.2138.073-4.8941.001
13D_DG604:DC716_E-0.369-0.19-0.143-3.756-5.869-5.032
112D_DG613:DC707_E1.133-0.049-0.08511.3789.5674.691
113D_DG614:DC706_E0.841-0.276-0.29220.436-6.201-4.319
114D_DG615:DC705_E0.161-0.283-0.803-8.721-9.259-7.564
11D_DT602:DA718_E-0.211-0.125-0.2990.777-9.363-1.585
15D_DT606:DA714_E0.33-0.094-0.055-10.937.81913.308
17D_DT608:DA712_E-0.107-0.226-0.177-27.514-7.256-6.791
116D_DT617:DA703_E0.2420.018-0.2232.546-16.378-5.265

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.