A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Jan-2021 number of released structures: 11166
Search for released structures

NDB ID: PD0221  PDB ID: 1JFI 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16DD_DA607DT608:DA712DT713_EE-1.629-0.0663.5625.05128.34217.527-4.9873.6851.57958.386-10.40533.608
18DD_DA609DA610:DT710DT711_EE0.5261.3363.101-5.11723.89211.086-4.537-2.7232.3864.49513.81426.797
19DD_DA610DA611:DT709DT710_EE-0.3421.1983.6984.00920.16916.976-4.292.1133.22249.89-9.91626.607
110DD_DA611DA612:DT708DT709_EE0.4680.7853.3711.23621.29323.962-2.951-0.5963.07342.141-2.44731.976
111DD_DA612DG613:DC707DT708_EE-0.0420.834.6522.40740.07527.532-4.0220.3533.37556.826-3.41348.358
14DD_DC605DT606:DA714DG715_EE1.865-0.0583.2846.2665.54936.651-0.851-2.0383.4998.685-9.80737.563
115DD_DC616DT617:DA703DG704_EE-1.7860.0483.2680.0484.18331.083-0.6983.3143.2447.762-0.08931.357
12DD_DG603DG604:DC716DC717_EE-0.689-0.743.428-1.0268.4831.654-2.8071.0423.1515.2031.8432.758
13DD_DG604DC605:DG715DC716_EE0.187-0.9213.404-1.4692.77339.139-1.711-0.4583.3254.1322.18839.26
112DD_DG613DG614:DC706DC707_EE-1.1040.653.3082.8765.29531.8210.222.4953.2619.55-5.18732.372
113DD_DG614DG615:DC705DC706_EE-0.268-1.3054.0050.98516.57830.459-5.0870.6232.9229.006-1.72334.598
114DD_DG615DC616:DG704DC705_EE1.054-0.5553.151-2.77.57834.042-1.993-2.1362.87612.7244.53334.952
11DD_DT602DG603:DC717DA718_EE0.7720.0663.12-4.14110.06829.065-1.708-2.1972.8519.237.90930.996
15DD_DT606DA607:DT713DA714_EE0.312-0.8034.1152.63443.37717.711-5.179-0.140.87568.753-4.17546.765
17DD_DT608DA609:DT711DA712_EE0.1972.0712.8862.16510.27925.3511.8090.1243.45222.243-4.68627.408
116DD_DT617DC618:DG702DA703_EE0.8540.6363.2824.0547.70935.309-0.098-0.7823.41512.476-6.56136.334

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.