A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: PD0224  PDB ID: 1JFT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA700:DT715_B0.014-0.085-0.445-12.9951.4438.334
15B_DA704:DT711_B-0.4140.028-0.049-4.041-2.145-8.517
16B_DA705:DT710_B-0.30.011-0.3415.591-9.1190.047
17B_DA706:DT709_B0.463-0.3140.0817.815-19.1124.462
12B_DC701:DG714_B0.167-0.3050.291-1.555-4.645-3.243
14B_DC703:DG712_B-1.138-0.337-0.1642.422-13.335-1.778
18B_DC707:DG708_B-0.742-0.368-0.33315.038-6.694-6.084
114B_DC713:DG702_B-1.006-0.4430.212-0.954-2.542-5.36
13B_DG702:DC713_B1.006-0.4430.2120.954-2.542-5.36
19B_DG708:DC707_B0.742-0.368-0.333-15.038-6.694-6.084
113B_DG712:DC703_B1.138-0.337-0.164-2.422-13.335-1.778
115B_DG714:DC701_B-0.167-0.3050.2911.555-4.645-3.243
110B_DT709:DA706_B-0.463-0.3140.08-17.815-19.1124.462
111B_DT710:DA705_B0.30.011-0.341-5.591-9.1190.047
112B_DT711:DA704_B0.4140.028-0.0494.041-2.145-8.517
116B_DT715:DA700_B-0.014-0.085-0.44512.9951.4438.334

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.