A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PD0236  PDB ID: 1JKQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_DA10:DT22_B-1.016-0.6950.122-1.143-9.786-2.185
110A_DA12:DT20_B0.394-0.296-0.157-5.155-10.106-3.085
111A_DA13:DT19_B0.442-0.3350.43810.089-2.7441.768
11A_DG3:DC29_B0.197-0.183-0.685-16.58710.262-5.9
112A_DG14:DC18_B0.231-0.3340.2715.082-3.653-3.069
12A_DT4:DA28_B-0.225-0.271-0.1363.843-9.2871.897
13A_DT5:DA27_B-1.285-0.008-0.1-2.395-15.104-0.292
14A_DT6:DA26_B0.204-0.257-0.119-2.456-20.791-3.33
15A_DT7:DA25_B-1.658-0.248-0.415-2.5490.872-6.358
16A_DT8:DA24_B-1.2090.155-0.128-5.122-8.8774.583
17A_DT9:DA23_B-0.69-0.062-0.151-1.754-6.321-0.677
19A_DT11:DA21_B-0.988-0.4240.007-0.966-2.438-11.561

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.