1JNM: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

Search for released structures

NDB ID: PD0241 PDB ID: 1JNM

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	C_DA206:DT315_D	-0.058	0.101	-0.043	-6.043	-6.237	5.468
1	9	C_DA209:DT312_D	0.167	0.041	0.103	-1.863	-11.549	2.134
1	14	C_DA214:DT307_D	0.27	-0.105	-0.188	-6.519	-10.071	1.176
1	18	C_DA218:DT303_D	0.52	-0.167	-0.608	-4.514	-12.814	1.806
1	1	C_DC201:DG320_D	-0.02	-0.444	0.003	-10.09	-10.512	-1.375
1	4	C_DC204:DG317_D	-0.196	-0.13	-0.448	-1.967	-7.024	-1.052
1	10	C_DC210:DG311_D	0.076	-0.101	-0.029	-2.107	-9.026	-3.163
1	13	C_DC213:DG308_D	-0.205	-0.08	0.071	-2.58	-10.997	-0.713
1	16	C_DC216:DG305_D	-0.167	-0.18	-0.501	0.365	-4.926	-1.732
1	19	C_DC219:DG302_D	0.4	0.087	-0.425	5.186	-5.342	0.902
1	2	C_DG202:DC319_D	-0.38	-0.143	-0.413	-4.954	-6.911	-1.87
1	5	C_DG205:DC316_D	-0.097	-0.28	-0.574	-3.504	-6.528	1.203
1	8	C_DG208:DC313_D	0.098	-0.111	-0.062	1.131	-10.102	-1.186
1	11	C_DG211:DC310_D	0.075	-0.221	0.197	3.809	-7.383	0.187
1	17	C_DG217:DC304_D	0.024	-0.145	-0.332	3.586	-6.084	-0.715
1	20	C_DG220:DC301_D	0.061	-0.357	-0.012	12.732	-11.305	-2.2
1	3	C_DT203:DA318_D	-0.474	-0.051	-0.286	2.224	-8.698	0.529
1	7	C_DT207:DA314_D	-0.144	-0.118	-0.084	4.131	-9.091	4.306
1	12	C_DT212:DA309_D	-0.295	0.113	-0.131	7.338	-15.104	1.152
1	15	C_DT215:DA306_D	-0.088	0.095	-0.088	6.598	-9.415	4.08

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.