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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0241
PDB ID:
1JNM
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
C_DA206:DT315_D
-0.058
0.101
-0.043
-6.043
-6.237
5.468
1
9
C_DA209:DT312_D
0.167
0.041
0.103
-1.863
-11.549
2.134
1
14
C_DA214:DT307_D
0.27
-0.105
-0.188
-6.519
-10.071
1.176
1
18
C_DA218:DT303_D
0.52
-0.167
-0.608
-4.514
-12.814
1.806
1
1
C_DC201:DG320_D
-0.02
-0.444
0.003
-10.09
-10.512
-1.375
1
4
C_DC204:DG317_D
-0.196
-0.13
-0.448
-1.967
-7.024
-1.052
1
10
C_DC210:DG311_D
0.076
-0.101
-0.029
-2.107
-9.026
-3.163
1
13
C_DC213:DG308_D
-0.205
-0.08
0.071
-2.58
-10.997
-0.713
1
16
C_DC216:DG305_D
-0.167
-0.18
-0.501
0.365
-4.926
-1.732
1
19
C_DC219:DG302_D
0.4
0.087
-0.425
5.186
-5.342
0.902
1
2
C_DG202:DC319_D
-0.38
-0.143
-0.413
-4.954
-6.911
-1.87
1
5
C_DG205:DC316_D
-0.097
-0.28
-0.574
-3.504
-6.528
1.203
1
8
C_DG208:DC313_D
0.098
-0.111
-0.062
1.131
-10.102
-1.186
1
11
C_DG211:DC310_D
0.075
-0.221
0.197
3.809
-7.383
0.187
1
17
C_DG217:DC304_D
0.024
-0.145
-0.332
3.586
-6.084
-0.715
1
20
C_DG220:DC301_D
0.061
-0.357
-0.012
12.732
-11.305
-2.2
1
3
C_DT203:DA318_D
-0.474
-0.051
-0.286
2.224
-8.698
0.529
1
7
C_DT207:DA314_D
-0.144
-0.118
-0.084
4.131
-9.091
4.306
1
12
C_DT212:DA309_D
-0.295
0.113
-0.131
7.338
-15.104
1.152
1
15
C_DT215:DA306_D
-0.088
0.095
-0.088
6.598
-9.415
4.08
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.