A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: PD0241  PDB ID: 1JNM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_DA206:DT315_D-0.0580.101-0.043-6.043-6.2375.468
19C_DA209:DT312_D0.1670.0410.103-1.863-11.5492.134
114C_DA214:DT307_D0.27-0.105-0.188-6.519-10.0711.176
118C_DA218:DT303_D0.52-0.167-0.608-4.514-12.8141.806
11C_DC201:DG320_D-0.02-0.4440.003-10.09-10.512-1.375
14C_DC204:DG317_D-0.196-0.13-0.448-1.967-7.024-1.052
110C_DC210:DG311_D0.076-0.101-0.029-2.107-9.026-3.163
113C_DC213:DG308_D-0.205-0.080.071-2.58-10.997-0.713
116C_DC216:DG305_D-0.167-0.18-0.5010.365-4.926-1.732
119C_DC219:DG302_D0.40.087-0.4255.186-5.3420.902
12C_DG202:DC319_D-0.38-0.143-0.413-4.954-6.911-1.87
15C_DG205:DC316_D-0.097-0.28-0.574-3.504-6.5281.203
18C_DG208:DC313_D0.098-0.111-0.0621.131-10.102-1.186
111C_DG211:DC310_D0.075-0.2210.1973.809-7.3830.187
117C_DG217:DC304_D0.024-0.145-0.3323.586-6.084-0.715
120C_DG220:DC301_D0.061-0.357-0.01212.732-11.305-2.2
13C_DT203:DA318_D-0.474-0.051-0.2862.224-8.6980.529
17C_DT207:DA314_D-0.144-0.118-0.0844.131-9.0914.306
112C_DT212:DA309_D-0.2950.113-0.1317.338-15.1041.152
115C_DT215:DA306_D-0.0880.095-0.0886.598-9.4154.08

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.