A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD0241  PDB ID: 1JNM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16CC_DA206DT207:DA314DT315_DD-0.179-0.5593.0041.6892.27926.387-1.7640.7942.934.975-3.68626.536
19CC_DA209DC210:DG311DT312_DD0.004-0.7253.3420.91.47730.717-1.6610.1723.3032.785-1.69830.764
114CC_DA214DT215:DA306DT307_DD0.085-0.52.926-1.3692.6623.484-2.002-0.6092.8436.53.34623.671
118CC_DA218DC219:DG302DT303_DD-0.229-0.4733.012-1.5583.63527.812-1.7560.1372.9367.5143.2228.086
11CC_DC201DG202:DC319DG320_DD-0.4240.4953.156-0.40414.68328.7-1.7480.6923.04927.4670.75632.17
14CC_DC204DG205:DC316DG317_DD-0.1421.1923.626-0.76118.85829.482-1.5080.0953.7133.1251.33734.892
110CC_DC210DG211:DC310DG311_DD0.0540.4943.266-1.7829.54934.639-0.589-0.3473.27615.662.92235.935
113CC_DC213DA214:DT307DG308_DD0.5250.6173.3043.1696.74843.260.165-0.3933.3879.073-4.26143.867
116CC_DC216DG217:DC304DG305_DD0.0411.0543.497-1.47617.57532.489-1.089-0.2973.58328.9112.42836.854
119CC_DC219DG220:DC301DG302_DD0.4610.5613.1270.35915.13829.937-1.528-0.7413.05727.223-0.64633.47
12CC_DG202DT203:DA318DC319_DD0.197-0.6073.031-2.1285.13928.069-2.287-0.8382.85410.4664.33328.604
15CC_DG205DA206:DT315DC316_DD0.098-0.2213.254-5.3317.35437.212-1.249-0.8113.11411.3198.20638.267
18CC_DG208DA209:DT312DC313_DD0.231-0.1693.339-1.5856.61633.994-1.316-0.6353.23611.1782.67734.648
111CC_DG211DT212:DA309DC310_DD-0.18-0.8183.2312.571-0.11229.308-1.5870.8983.207-0.222-5.06929.419
117CC_DG217DA218:DT303DC304_DD0.143-0.1183.4852.2556.09637.746-0.9940.0843.4289.337-3.45438.281
13CC_DT203DC204:DG317DA318_DD-0.131-0.0983.3592.8154.66137.553-0.7610.573.3067.194-4.34537.932
17CC_DT207DG208:DC313DA314_DD-0.5510.5993.303-2.646.95340.0650.0680.493.38410.0433.81440.722
112CC_DT212DC213:DG308DA309_DD-0.179-0.2353.519-1.4148.77434.308-1.7680.0733.36314.5722.34935.407
115CC_DT215DC216:DG305DA306_DD-0.142-0.2273.4122.6847.00835.49-1.3830.6193.2911.341-4.34436.25

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.