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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PD0250
PDB ID:
1JWL
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
5
D_DA10:DT15_E
0.413
0.095
-0.614
-1.01
12.353
-17.304
1
10
D_DA15:DT10_E
-0.755
1.884
2.36
7.498
4.734
-118.618
1
12
D_DA17:DT8_E
0.011
0.05
-0.779
-12.715
-31.903
4.031
1
13
D_DA18:DT7_E
0.339
-0.006
0.17
5.286
-27.393
-4.057
1
7
D_DC12:DG13_E
-0.161
-0.001
0.191
23.898
-0.723
-5.481
1
14
D_DC19:DG6_E
0.05
0.13
-0.195
-5.859
-17.721
6.262
1
2
D_DG7:DC18_E
0.048
-0.065
-0.429
-1.843
-10.278
-5.686
1
4
D_DG9:DC16_E
-0.017
-0.099
-0.245
-4.058
-18.527
-2.855
1
6
D_DG11:DC14_E
0.051
0.016
-0.047
16.247
-4.769
-3.204
1
8
D_DG13:DC12_E
0.165
-0.084
0.123
-16.123
0.202
-6.496
1
9
D_DG14:DC11_E
-0.15
-0.033
0.379
7.731
-2.904
-2.848
1
1
D_DT6:DA19_E
-0.06
-0.118
0.767
2.533
-12.13
-3.964
1
3
D_DT8:DA17_E
-0.389
0.049
0.07
-3.951
-22.289
-7.463
1
11
D_DT16:DA9_E
-0.216
0.18
0.114
3.788
-27.435
-7.279
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.