A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0250  PDB ID: 1JWL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15D_DA10:DT15_E0.4130.095-0.614-1.0112.353-17.304
110D_DA15:DT10_E-0.7551.8842.367.4984.734-118.618
112D_DA17:DT8_E0.0110.05-0.779-12.715-31.9034.031
113D_DA18:DT7_E0.339-0.0060.175.286-27.393-4.057
17D_DC12:DG13_E-0.161-0.0010.19123.898-0.723-5.481
114D_DC19:DG6_E0.050.13-0.195-5.859-17.7216.262
12D_DG7:DC18_E0.048-0.065-0.429-1.843-10.278-5.686
14D_DG9:DC16_E-0.017-0.099-0.245-4.058-18.527-2.855
16D_DG11:DC14_E0.0510.016-0.04716.247-4.769-3.204
18D_DG13:DC12_E0.165-0.0840.123-16.1230.202-6.496
19D_DG14:DC11_E-0.15-0.0330.3797.731-2.904-2.848
11D_DT6:DA19_E-0.06-0.1180.7672.533-12.13-3.964
13D_DT8:DA17_E-0.3890.0490.07-3.951-22.289-7.463
111D_DT16:DA9_E-0.2160.180.1143.788-27.435-7.279

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.