1JWL: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

Search for released structures

NDB ID: PD0250 PDB ID: 1JWL

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	D_DA10:DT15_E	0.413	0.095	-0.614	-1.01	12.353	-17.304
1	10	D_DA15:DT10_E	-0.755	1.884	2.36	7.498	4.734	-118.618
1	12	D_DA17:DT8_E	0.011	0.05	-0.779	-12.715	-31.903	4.031
1	13	D_DA18:DT7_E	0.339	-0.006	0.17	5.286	-27.393	-4.057
1	7	D_DC12:DG13_E	-0.161	-0.001	0.191	23.898	-0.723	-5.481
1	14	D_DC19:DG6_E	0.05	0.13	-0.195	-5.859	-17.721	6.262
1	2	D_DG7:DC18_E	0.048	-0.065	-0.429	-1.843	-10.278	-5.686
1	4	D_DG9:DC16_E	-0.017	-0.099	-0.245	-4.058	-18.527	-2.855
1	6	D_DG11:DC14_E	0.051	0.016	-0.047	16.247	-4.769	-3.204
1	8	D_DG13:DC12_E	0.165	-0.084	0.123	-16.123	0.202	-6.496
1	9	D_DG14:DC11_E	-0.15	-0.033	0.379	7.731	-2.904	-2.848
1	1	D_DT6:DA19_E	-0.06	-0.118	0.767	2.533	-12.13	-3.964
1	3	D_DT8:DA17_E	-0.389	0.049	0.07	-3.951	-22.289	-7.463
1	11	D_DT16:DA9_E	-0.216	0.18	0.114	3.788	-27.435	-7.279

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.