1JWL: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: PD0250 PDB ID: 1JWL

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	DD_DA10DG11:DC14DT15_EE	0.844	0.265	3.324	0.152	-6.447	34.907	1.39	-1.363	3.229	-10.635	-0.252	35.48
1	10	DD_DA15DT16:DA9DT10_EE	-1.069	0.804	3.789	10.624	-19.571	-31.051	1.975	0.101	3.806	31.926	17.332	-38.05
1	12	DD_DA17DA18:DT7DT8_EE	0.164	0.634	2.402	-8.248	-1.449	36.873	1.114	-1.025	2.289	-2.256	12.837	37.78
1	13	DD_DA18DC19:DG6DT7_EE	0.223	-0.477	3.358	1.013	-3.04	41.235	-0.339	-0.203	3.388	-4.308	-1.436	41.354
1	7	DD_DC12DG13:DC12DG13_EE	-0.435	1.836	5.003	0.955	53.437	20.85	-4.112	0.563	3.587	70.219	-1.255	57.089
1	2	DD_DG7DT8:DA17DC18_EE	-0.725	-1.339	3.098	-4.71	6.826	32.108	-3.407	0.54	2.837	12.091	8.342	33.134
1	4	DD_DG9DA10:DT15DC16_EE	-1.596	0.143	3.716	-7.794	1.851	32.276	-0.12	1.232	3.984	3.268	13.757	33.229
1	6	DD_DG11DC12:DG13DC14_EE	-0.581	-0.803	3.439	0.411	3.558	30.695	-2.223	1.173	3.319	6.693	-0.773	30.898
1	8	DD_DG13DG14:DC11DC12_EE	1.032	-0.963	2.837	1.204	-3.16	29.009	-1.298	-1.814	2.963	-6.281	-2.394	29.201
1	9	DD_DG14DA15:DT10DC11_EE	0.702	-0.675	4.006	-12.316	11.847	94.538	-0.706	-0.734	3.836	8.014	8.331	95.708
1	1	DD_DT6DG7:DC18DA19_EE	-1.727	0.328	2.92	3.835	2.816	42.066	0.203	2.734	2.775	3.908	-5.322	42.322
1	3	DD_DT8DG9:DC16DA17_EE	-0.11	0.932	3.389	1.33	3.468	36.581	0.982	0.364	3.454	5.508	-2.113	36.763
1	11	DD_DT16DA17:DT8DA9_EE	0.852	1.562	3.616	8.184	15.867	35.29	-0.01	-0.064	4.03	24.345	-12.557	39.42

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.