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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PD0250
PDB ID:
1JWL
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
5
DD_DA10DG11:DC14DT15_EE
0.844
0.265
3.324
0.152
-6.447
34.907
1.39
-1.363
3.229
-10.635
-0.252
35.48
1
10
DD_DA15DT16:DA9DT10_EE
-1.069
0.804
3.789
10.624
-19.571
-31.051
1.975
0.101
3.806
31.926
17.332
-38.05
1
12
DD_DA17DA18:DT7DT8_EE
0.164
0.634
2.402
-8.248
-1.449
36.873
1.114
-1.025
2.289
-2.256
12.837
37.78
1
13
DD_DA18DC19:DG6DT7_EE
0.223
-0.477
3.358
1.013
-3.04
41.235
-0.339
-0.203
3.388
-4.308
-1.436
41.354
1
7
DD_DC12DG13:DC12DG13_EE
-0.435
1.836
5.003
0.955
53.437
20.85
-4.112
0.563
3.587
70.219
-1.255
57.089
1
2
DD_DG7DT8:DA17DC18_EE
-0.725
-1.339
3.098
-4.71
6.826
32.108
-3.407
0.54
2.837
12.091
8.342
33.134
1
4
DD_DG9DA10:DT15DC16_EE
-1.596
0.143
3.716
-7.794
1.851
32.276
-0.12
1.232
3.984
3.268
13.757
33.229
1
6
DD_DG11DC12:DG13DC14_EE
-0.581
-0.803
3.439
0.411
3.558
30.695
-2.223
1.173
3.319
6.693
-0.773
30.898
1
8
DD_DG13DG14:DC11DC12_EE
1.032
-0.963
2.837
1.204
-3.16
29.009
-1.298
-1.814
2.963
-6.281
-2.394
29.201
1
9
DD_DG14DA15:DT10DC11_EE
0.702
-0.675
4.006
-12.316
11.847
94.538
-0.706
-0.734
3.836
8.014
8.331
95.708
1
1
DD_DT6DG7:DC18DA19_EE
-1.727
0.328
2.92
3.835
2.816
42.066
0.203
2.734
2.775
3.908
-5.322
42.322
1
3
DD_DT8DG9:DC16DA17_EE
-0.11
0.932
3.389
1.33
3.468
36.581
0.982
0.364
3.454
5.508
-2.113
36.763
1
11
DD_DT16DA17:DT8DA9_EE
0.852
1.562
3.616
8.184
15.867
35.29
-0.01
-0.064
4.03
24.345
-12.557
39.42
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.