A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jun-2019 number of released structures: 10246
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NDB ID: RR0041  PDB ID: 1K01 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A5:U2872_A0.003-0.057-0.385-9.851-12.4380.469
16A_A6:U2871_A0.007-0.097-0.572-8.202-5.31-1.119
18A_A8:U2869_A0.057-0.05-0.30.318-16.647-2.937
116A_A21:U529_A0.018-0.074-0.451-3.847-9.024-2.205
134A_A43:U447_A0.059-0.3310.941-13.427-21.56-5.017
152A_A51:A117_A4.445-5.884-0.77454.272-4.228138.022
153A_A52:G115_A-6.772-3.7520.452-8.482-15.1023.644
156A_A55:U112_A0.03-0.007-0.266-14.19-21.231-8.466
162A_A60:U92_A-0.004-0.1370.208-11.2378.6044.355
164A_A63:A89_A-1.695-1.018-1.796-1.0120.081160.544
172A_A80:U103_A0.0110.0-0.13-20.078-15.88-2.618
175A_A83:G100_A-6.39-4.6871.5394.261-21.2662.239
181A_A129:U142_A-0.046-0.248-0.804-1.016-6.5775.739
140A_A163:U187_A-0.037-0.087-0.431-4.031-13.0742.48
187A_A168:U183_A-4.147-0.7770.086-10.61-36.99-62.573
191A_A172:U177_A0.237-0.6-1.43514.3047.2532.294
193A_A193:U444_A-4.186-2.407-1.476-10.299-14.363-97.713
195A_A198:U440_A-4.812-2.568-0.65611.117-45.514-69.723
199A_A199:G209_A-7.036-2.261-0.249-43.638-18.71935.899
1101A_A202:U207_A0.119-0.131-0.647.20515.706-12.247
1110A_A221:G231_A-6.778-2.702-0.965-0.9788.3753.176
1117A_A296:U366_A0.041-0.159-0.831-5.2583.698-1.688
1118A_A297:U365_A0.046-0.301-1.164-4.9745.65-1.028
1127A_A310:G349_A1.4724.3531.20635.252-8.808120.981
1138A_A336:U348_A0.028-0.084-0.3820.858-6.4960.756
1150A_A415:A436_A-2.018-0.1530.46548.054-12.865149.985
1174A_A468:A482_A5.677-4.9361.14140.3083.424177.556
1176A_A471:G480_A-6.83-4.2-0.1624.793-8.0812.117
1181A_A490:U486_A-4.235-1.664-0.492-20.448-15.923-84.034
1179A_A491:A515_A-1.43-1.558-0.356-37.313-7.156167.81
1183A_A494:A507_A-6.522-3.6540.1187.7914.805-24.193
1190A_A539:U2024_A-5.079-2.2490.2715.431-18.206-66.222
1198A_A542:G570_A-7.916-3.994-0.6033.0033.892-39.876
1202A_A546:U566_A-0.205-0.115-1.241-26.486-20.7876.428
1207A_A551:U561_A0.013-0.064-0.054-9.392-17.387-1.053
1220A_A595:C1264_A-2.0371.185-0.77143.908-38.192-96.915
1222A_A599:U680_A0.063-0.361.3126.16-2.7213.597
1228A_A606:U674_A0.04-0.01-0.353-10.184-2.899-5.5
1237A_A618:G630_A-6.613-3.4990.06510.139-27.556-8.423
1238A_A619:C629_A-1.026-0.079-0.14610.155-26.3598.812
1252A_A688:U816_A-3.778-1.869-1.34413.889-17.604-77.246
1253A_A689:A815_A1.8841.6190.053-38.023-17.584-148.476
1254A_A690:A813_A-1.552-0.718-1.52639.0665.051178.843
1257A_A693:U810_A-0.002-0.096-0.253-2.89-16.8451.678
1263A_A702:U786_A0.0670.026-0.416-5.41-7.271-5.66
1264A_A703:U785_A0.031-0.087-0.1741.057-15.108-1.588
1267A_A706:U782_A0.013-0.051-0.053-11.127-15.499-2.257
1270A_A709:U779_A-0.043-0.104-0.404-13.328-14.124.374
1272A_A712:G746_A-6.887-5.0660.7225.9163.049-11.52
1277A_A719:G738_A-6.843-4.208-0.6677.556-17.984-11.373
1278A_A720:C737_A-5.941-0.7940.0422.624-10.8649.596
1298A_A790:U800_A0.034-0.022-0.428-4.658-5.3551.19
1302A_A834:G983_A-6.981-4.154-0.59212.8220.041-10.068
1315A_A846:U837_A-1.325-0.15-0.4442.72-8.9041.334
1317A_A848:U835_A0.6030.432-0.847-12.674-16.1027.074
1325A_A856:U946_A0.023-0.097-0.421-5.895-9.4350.362
1332A_A862:G940_A0.8160.65-2.17130.87-27.495-17.97
1340A_A874:G928_A-7.04-3.9471.063-2.112-23.686-16.169
1342A_A876:U925_A-0.009-0.3361.1578.555-7.9496.641
1347A_A885:U917_A-0.132-0.448-1.683-18.659-9.74211.817
1348A_A886:U916_A0.105-0.112-0.805-15.0199.967-0.072
1344A_A921:U881_A0.021-0.057-0.173-7.66-9.4370.814
1310A_A964:C975_A-2.429-0.396-0.2283.6450.479-1.637
1312A_A966:U973_A-0.044-0.0820.1141.2986.3872.622
1378A_A1004:G1173_A0.9191.9080.184-12.262-5.92211.014
1380A_A1007:U1170_A-0.032-0.121-0.151-1.719-8.8766.413
1383A_A1012:G1165_A-6.62-3.665-0.0939.921-29.9912.124
1387A_A1022:U1161_A0.047-0.145-0.66-14.7671.3791.349
1389A_A1025:U1159_A-0.053-0.184-0.806-3.791-5.0374.908
1397A_A1032:U1151_A-5.268-3.7781.168-14.19929.923-55.453
1399A_A1039:A1137_A6.305-4.695-1.42958.862-8.532175.572
1400A_A1040:G1136_A-7.171-4.3210.4674.895-4.751-20.342
1403A_A1043:G1133_A-1.0052.166-1.0140.159-5.1881.477
1413A_A1061:G2731_A0.7654.131-0.269-14.58535.05-82.505
1416A_A1065:U1116_A-0.004-0.2161.18311.6694.8331.963
1418A_A1068:U1092_A0.048-0.336-0.9816.312-26.47212.02
1429A_A1179:U1195_A0.041-0.028-0.337-17.454-3.030.609
1430A_A1180:U1194_A-0.028-0.081-0.288-0.47-8.9181.169
1354A_A1203:G831_A-6.727-3.676-1.127-14.22628.804-17.651
1359A_A1208:U826_A-0.033-0.0380.3279.993-3.8991.664
1366A_A1215:U1257_A-0.0740.424-0.537-4.255-14.46412.913
1436A_A1226:G1249_A-6.841-5.8880.407-8.631-17.304-10.595
1437A_A1227:G1248_A-6.87-4.240.287.197-11.537-3.342
1441A_A1231:U1244_A0.035-0.043-0.253-10.582.6181.643
1446A_A1275:G2001_A-2.1494.3321.408-14.521-0.47490.917
1451A_A1281:G1995_A-6.731-4.3480.202-1.13-14.051-1.47
1452A_A1282:U1994_A-0.058-0.176-0.967-5.839-6.757-2.563
1468A_A1299:U1295_A-4.347-2.4671.761-20.9665.161-61.467
1489A_A1314:A1658_A-3.5622.321.303-7.08632.184-103.579
1494A_A1321:G1622_A-6.914-4.2690.61-22.334-3.352-0.781
1497A_A1354:A1408_A-3.858-2.369-0.835-24.72410.67637.33
1521A_A1367:G1390_A-6.83-3.9110.18115.088-17.748-9.425
1503A_A1416:U1357_A0.13-0.1490.567-12.061-22.933-3.318
1506A_A1420:U1611_A0.031-0.088-0.3837.264-19.7812.944
1509A_A1423:U1608_A0.001-0.084-0.372-3.054-1.258-1.655
1533A_A1433:U1594_A-4.383-1.72-0.548-12.764-3.486-107.458
1536A_A1437:U1591_A0.144-0.149-0.50344.905-17.77414.388
1567A_A1486:U1537_A-0.4820.5231.8764.3417.10749.126
1572A_A1492:U1530_A-0.601-1.478-2.1753.914-0.014-0.774
1573A_A1493:C1529_A-3.08-0.277-1.31111.82814.032-63.435
1577A_A1499:U1521_A0.003-0.0950.172-17.21-12.1662.092
1584A_A1512:C1514_A3.584-4.0861.582-50.89420.845145.879
1553A_A1567:U1454_A0.022-0.203-1.006-6.709-4.5722.886
1554A_A1568:A1453_A6.755-4.5880.482-0.893-3.907-20.64
1555A_A1569:U1452_A-4.515-2.736-0.76-4.098-12.716-84.501
1559A_A1574:A1448_A3.9261.7510.952.14836.425-23.313
1593A_A1624:U1637_A-3.952-1.4040.909-9.156.308-82.261
1596A_A1643:U1656_A0.019-0.068-0.661-11.113-5.65-3.653
1456A_A1667:U1990_A1.2460.001-0.122-1.271-11.23310.115
1458A_A1669:A1988_A3.6430.403-1.899-47.567-10.461-47.938
1601A_A1682:U1978_A0.8520.0110.682-8.83-12.3-14.819
1603A_A1686:U1976_A-0.7330.184-1.134.212.3781.419
1614A_A1699:U1723_A-3.025-0.4020.52814.176-23.627-7.074
1620A_A1706:A1715_A6.278-4.844-1.58219.83-18.658172.924
1621A_A1707:A1714_A-6.106-4.2050.79-9.6325.636-11.866
1633A_A1764:A1960_A2.263-3.2851.2568.99617.859-96.05
1641A_A1774:G2586_A2.6017.431.818-7.401-14.847160.505
1645A_A1785:U1817_A-0.7150.018-0.627-6.034-6.52412.956
1650A_A1794:G1806_A-6.922-3.791-0.38313.89-9.882-6.151
1652A_A1796:U1804_A0.5320.371-1.475-16.544.54313.616
1634A_A1821:U1710_A-1.438-0.1360.86339.229-9.6240.782
1660A_A1884:C1830_A-4.314-1.0211.23234.026-6.403-45.554
1680A_A1919:C1944_A-3.9640.755-1.0421.187-26.275-120.247
1197A_A2012:A581_A3.612-4.0670.551-19.4727.757-72.733
1704A_A2040:U2590_A0.9440.444-0.761-0.509-2.065.256
1713A_A2054:U2417_A0.0670.079-0.3368.127-2.5518.927
1717A_A2060:U2222_A-0.5830.176-0.426-3.286-18.382-0.55
1720A_A2063:U2219_A-0.957-0.524-0.6138.385-9.985-10.509
1722A_A2065:G2216_A-7.192-4.332-0.189-1.908-7.534-11.049
1729A_A2073:U2208_A-2.562-0.4780.576-29.039-3.1-4.898
1749A_A2119:U2138_A-6.173-4.5232.02716.991-34.889-4.308
1742A_A2167:A2169_A1.691-2.435-1.542-36.407-32.743-60.432
1762A_A2246:U2251_A0.034-0.007-1.03922.66213.365155.586
1753A_A2253:C2244_A-6.597-1.8820.236-9.31-5.775-1.928
1756A_A2257:U2241_A1.304-0.3910.947-0.3758.079-0.466
1775A_A2277:G2297_A-7.225-4.730.46-12.59910.066-0.924
1776A_A2278:U2296_A-1.008-0.476-1.243-0.7431.314-1.223
1794A_A2331:G2344_A-7.361-5.1090.44-1.728-10.018-21.288
1787A_A2348:U2327_A1.2-0.053-0.96-6.846-19.581-3.681
1791A_A2352:U2359_A-0.98-0.064-0.364-0.34-12.46210.152
1160A_A2390:A425_A6.303-4.211-0.358-0.243-9.04-24.546
1161A_A2391:G2384_A-7.072-4.4780.106-2.5415.837-8.651
1167A_A2397:U2377_A0.2740.7961.0790.026-18.48834.421
1171A_A2401:A2372_A4.2260.513-1.5473.315-19.193-83.466
1798A_A2432:C2478_A2.580.451-1.2727.1515.488-28.531
1803A_A2438:U2472_A0.026-0.075-0.82814.8266.795-10.943
1812A_A2450:U2458_A-0.5350.034-1.558-12.0652.822-5.555
1837A_A2510:A2641_A1.112.381-0.69724.86236.077-178.344
1841A_A2569:U2583_A0.0640.389-1.246-6.33-9.8419.837
1697A_A2600:U2030_A0.9680.025-0.36-15.714-15.605-7.495
1849A_A2611:U2766_A-0.2740.13-0.667-5.507-15.6027.033
1851A_A2614:U2763_A0.4260.214-0.488-14.674-10.357-1.134
1839A_A2636:G2643_A-6.735-3.342-0.314-4.8383.104-7.114
1862A_A2649:U2629_A-0.0840.002-0.607-13.043-3.616-4.433
1866A_A2653:U2625_A0.31-0.212-1.1763.8619.9-8.275
1867A_A2654:G2712_A0.0221.74-0.309-4.101-38.654-25.534
1871A_A2658:U2708_A-1.1640.025-0.382-6.082-18.5538.309
1877A_A2701:C2667_A-5.624-4.286-0.6072.937-8.949-47.368
1873A_A2705:U2663_A-1.246-0.1820.2279.035-31.674-26.988
1889A_A2714:G2750_A-6.927-3.806-0.1585.045-1.0730.944
1893A_A2718:G2746_A1.241.413-0.316-18.6080.429-14.191
1895A_A2721:G2743_A-6.795-3.6510.182-7.842-5.049-0.198
1901A_A2729:A2733_A4.0531.1041.595-18.119-21.744103.649
1831A_A2745:A2520_A-7.114-2.3930.517-3.465-8.46339.296
1905A_A2785:G2865_A-6.609-3.8080.78726.817-2.085-5.097
1907A_A2787:U2863_A1.0270.179-0.893-8.077-8.621.36
1914A_A2796:A2801_A6.829-0.571-0.894-21.0099.60559.521
1915A_A2809:A2858_A6.589-3.339-0.003-46.0346.861-6.034
1917A_A2812:U2856_A0.3230.034-0.69411.836-8.407-6.103
1922A_A2817:U2850_A0.4670.0330.40510.483-7.1993.028
1931A_A2829:U2838_A0.3320.217-0.23-2.372-14.415.765
1933A_A2831:U2836_A0.12-0.117-1.099-18.7433.451-7.172
1878A_A2848:U2700_A0.015-3.4661.474-29.87229.52391.002
14A_C4:G2873_A0.183-0.057-0.3359.943-12.2350.203
114A_C19:G531_A0.134-0.076-0.5847.229-6.4470.294
115A_C20:G530_A0.115-0.054-0.238.844-7.592-1.296
117A_C22:G528_A0.199-0.146-0.8174.954-18.4146.933
124A_C31:G485_A0.05-0.1430.583-12.109-24.219-3.009
125A_C32:G484_A-0.216-0.3821.395-12.05-22.291-13.036
128A_C37:G454_A0.187-0.021-0.33913.178-14.3931.035
130A_C39:G452_A0.076-0.1270.0362.291-19.852-1.365
144A_C45:G156_A0.106-0.0060.06621.4210.0291.535
145A_C46:G155_A0.023-0.386-1.79525.273-3.514-2.288
157A_C56:G69_A0.008-0.2981.03617.242-27.241-9.084
159A_C58:G67_A0.023-0.1551.303-29.254-3.326-5.747
161A_C64:G88_A0.132-0.045-0.64215.191-12.565-0.178
165A_C65:G87_A0.126-0.095-0.0648.807-17.172-2.366
167A_C75:G108_A0.169-0.091-0.54711.215-16.091.057
168A_C76:G107_A0.111-0.0670.0783.101-12.683-1.556
169A_C77:G106_A0.0870.009-0.35318.284-4.4-1.844
170A_C78:G105_A0.201-0.077-1.22433.767-11.47-0.614
173A_C81:C102_A4.344-1.6730.076-13.65-9.9-8.852
177A_C85:G95_A0.108-0.088-0.291-3.875-14.4510.827
178A_C126:G121_A0.125-0.047-0.94725.555-11.0540.351
179A_C127:G120_A0.172-0.333-1.51819.63-14.5685.114
180A_C128:G119_A0.129-0.1190.303-4.284-9.033-4.684
182A_C130:G141_A0.118-0.121-0.9313.901-7.2350.329
183A_C131:G140_A0.134-0.122-0.623-1.7530.578-0.872
185A_C133:G138_A0.117-0.123-0.7432.538-0.0320.053
149A_C145:G152_A0.135-0.082-0.86216.968-7.7330.987
150A_C146:G151_A0.012-0.05-0.5720.20814.88-1.558
139A_C162:G188_A0.137-0.037-0.72120.162-11.057-0.116
188A_C169:C180_A-6.964-5.208-0.61622.896-14.875-10.288
1104A_C213:G238_A1.4450.63-0.20416.152-13.67522.631
1105A_C214:G237_A0.186-0.298-1.2828.028-10.694.535
1112A_C223:G229_A0.096-0.208-1.17211.737-2.632-2.051
197A_C244:G438_A0.09-0.0240.011.671-11.159-1.311
198A_C245:G437_A0.216-0.047-0.54416.961-17.8931.038
1116A_C295:G367_A0.096-0.068-0.1217.975-8.742-2.003
1119A_C298:G364_A0.06-0.221-1.13212.5853.962-4.566
1120A_C299:G363_A0.11-0.09-0.083-5.28-21.3051.735
1122A_C303:G359_A0.081-0.1040.024-3.269-23.9040.975
1124A_C307:G353_A0.067-0.195-0.921-0.113-1.17-0.827
1125A_C308:G352_A0.125-0.107-0.528-8.062-1.44-0.383
1135A_C316:G323_A0.159-0.103-0.3894.852-19.1722.958
1144A_C391:G409_A0.166-0.3441.1233.0239.3875.973
1152A_C420:G433_A0.124-0.070.26714.273-16.729-2.444
1154A_C422:G431_A0.083-0.18-0.9636.836-2.096-2.1
1177A_C472:G479_A0.203-0.105-0.89515.523-12.5822.416
1178A_C473:G478_A0.085-0.134-0.8587.2738.005-2.425
1184A_C495:G506_A0.188-0.102-0.90822.141-15.5211.113
1185A_C496:G505_A0.198-0.067-0.64416.399-14.6551.501
1186A_C497:G504_A0.125-0.128-0.8949.427-1.8320.632
1187A_C498:G503_A-0.043-0.192-0.97313.12920.512-5.083
1201A_C545:G567_A0.162-0.107-0.4249.567-20.3121.638
1206A_C550:G562_A0.173-0.09-0.6729.98-14.4021.982
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1748A_U2105:A2159_A1.2020.327-1.07616.041-0.09322.514
1733A_U2180:A2204_A4.025-1.203-1.2392.901-45.961-91.549
1736A_U2185:G2200_A2.7390.4550.037-18.0551.13418.726
1329A_U2236:A2226_A0.8820.0490.441-5.958-39.09414.975
1769A_U2270:G2320_A3.289-0.5760.308-4.959-14.531-0.886
1773A_U2275:A2314_A5.289-4.080.682-19.01512.675-63.92
1780A_U2284:U2291_A2.4440.0130.76513.062-12.21363.072
1796A_U2335:G2341_A-1.426-0.632-1.8063.08222.086-40.241
1784A_U2366:A2307_A-1.08-0.011-0.491-2.779-8.371-3.285
1761A_U2369:A2404_A-2.914.267-1.209-55.8912.018-116.233
1157A_U2387:A428_A-0.002-0.107-0.271-6.788-11.453-2.237
1168A_U2398:G2376_A3.335-0.278-0.1931.213-14.19412.991
1802A_U2436:G2473_A1.689-0.1260.175-6.125-3.6960.512
1804A_U2439:U2471_A0.741-1.967-1.07115.743-18.1577.104
1806A_U2441:A2467_A0.646-0.134-0.028-6.054-18.7450.355
1816A_U2485:G2562_A-0.548-0.2590.338-3.35328.97810.513
1821A_U2490:C2554_A-2.555-1.741-0.513-14.575-13.2794.499
1824A_U2493:G2549_A2.602-0.3250.5853.948-8.8364.664
1830A_U2501:G2522_A1.571-0.365-0.2959.93-6.79-9.547
1827A_U2525:G2546_A0.7594.2910.171-22.253-12.267-40.137
1840A_U2541:A2545_A4.906-2.595-1.35114.175-46.068-86.754
1844A_U2572:A2579_A-0.2340.19-0.02223.498-22.1922.25
1293A_U2588:C765_A6.204-3.129-2.104-7.97963.2476.429
1691A_U2594:A2037_A-1.529-0.018-1.0610.4916.419-13.04
1696A_U2599:A2031_A0.6920.1440.295-11.096-14.4870.081
1852A_U2615:G2762_A1.952-0.658-1.25313.146-9.131-10.717
1853A_U2616:A2756_A4.986-2.93-0.2111.399-15.255-79.363
1864A_U2651:G2627_A3.035-0.752-0.505-7.034-4.757-9.991
1880A_U2672:A2696_A0.5930.263-0.5379.736-10.429.569
1883A_U2675:A2690_A0.5740.1710.096-1.491-12.84816.316
1885A_U2677:G2688_A1.7-0.072-0.0180.057-13.6757.63
1888A_U2680:A2685_A-0.4760.009-0.58316.731-9.838-6.538
1874A_U2704:G2664_A0.676-0.096-0.8940.356-5.9640.996
1894A_U2719:A2744_A5.145-3.225-0.8399.79-14.684-100.453
1900A_U2726:U2736_A3.164-0.677-0.78326.10427.882-100.803
1926A_U2822:G2844_A3.076-0.5190.0818.031-18.5562.119
1932A_U2830:G2837_A2.184-0.33-0.195.775-14.0343.989

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.