A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: UD0016  PDB ID: 1K8P 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DG4:DG22_B-1.611-3.3460.125-4.955-5.73889.735
14A_DG5:DG23_B-1.906-3.4480.048-12.41714.44387.532
11A_DG9:DG15_B1.8343.5430.152-6.016-4.02-87.194
12A_DG10:DG16_B1.5583.4740.2176.323-4.217-87.71
13A_DG11:DG17_B1.7993.159-0.07816.412-11.922-89.877
16B_DG21:DG3_A-1.7363.38-0.78811.838-0.3792.834

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.