A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: PD0269  PDB ID: 1KB4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA402:DT435_D-0.312-0.3630.3651.446-7.069-0.36
14C_DA404:DT433_D-0.4090.1490.056-6.854-10.808-0.167
19C_DA409:DT428_D0.063-0.0520.35611.639-12.0291.007
112C_DA412:DT425_D0.2-0.1760.1625.827-3.9322.757
113C_DA413:DT424_D-0.0910.1370.22-6.099-11.264-0.792
118C_DA418:DT419_D0.378-0.1470.31116.882-14.9160.288
11C_DC401:DG436_D0.041-0.119-0.1174.788-11.089-1.57
13C_DC403:DG434_D0.018-0.219-0.3587.68-3.0221.001
18C_DC408:DG429_D-0.18-0.22-0.1441.404-0.186-0.91
110C_DC410:DG427_D0.588-0.20.2444.712-9.837-3.337
117C_DC417:DG420_D0.476-0.202-0.3897.773-1.5233.215
15C_DG405:DC432_D-0.224-0.2570.293.7380.2633.645
16C_DG406:DC431_D-0.272-0.264-0.337-14.069-9.5470.409
111C_DG411:DC426_D-0.119-0.136-0.13-2.52-4.998-0.691
114C_DG414:DC423_D-0.115-0.2110.0380.15-5.9990.323
115C_DG415:DC422_D-0.103-0.367-0.129-5.081-6.581-4.685
17C_DT407:DA430_D-0.591-0.0650.339-7.867-15.2093.558
116C_DT416:DA421_D-0.227-0.4560.13-1.463-9.254-4.503

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.