A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Sep-2022 number of released structures: 12282
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NDB ID: 1KOC  PDB ID: 1KOC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A5:U40_B0.007-0.176-1.48112.759-21.93127.453
12A_A7:C39_B-1.385-0.5261.121-10.07215.18319.983
15A_A11:U36_B0.3050.1291.0560.29-11.70216.5
17A_C13:G9_A-0.339-3.6190.53236.797-6.61146.731
14A_G10:C37_B-0.8580.141-0.4616.905-0.16513.368
16A_G12:G35_B1.4734.207-0.343-12.648-2.561-68.149
18A_G14:C28_B-0.091-0.04-0.9530.45-23.436-11.344
13B_G34:G38_B0.3154.146-0.531-12.02229.797-125.176

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.