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As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0282
PDB ID:
1KSX
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
C_DA4:DT21_G
0.041
0.151
0.007
-14.173
-6.263
11.159
1
10
C_DA13:DT12_G
-0.354
-0.008
0.161
-8.068
-10.606
6.67
1
11
C_DA14:DT11_G
0.306
0.21
-0.074
-6.581
-9.169
2.634
1
13
C_DA16:DT9_G
0.597
-0.216
-0.395
6.451
-6.035
-1.925
1
14
C_DA17:DT8_G
0.333
-0.062
0.216
10.501
-5.805
6.059
1
16
C_DA19:DT6_G
0.175
-0.084
0.242
0.603
-2.552
1.807
1
17
C_DA20:DT5_G
-0.151
-0.166
0.284
4.561
-0.387
15.48
1
12
C_DC15:DG10_G
1.078
0.061
0.159
8.178
-0.001
11.817
1
15
C_DC18:DG7_G
0.548
0.005
-0.094
16.623
-7.482
3.449
1
4
C_DG7:DC18_G
-0.366
0.003
-0.112
-16.637
-7.486
3.456
1
7
C_DG10:DC15_G
-1.082
-0.122
0.159
-8.187
0.027
11.81
1
2
C_DT5:DA20_G
0.226
-0.001
0.262
-4.558
-0.41
15.479
1
3
C_DT6:DA19_G
-0.038
0.036
0.228
-0.615
-2.557
1.809
1
5
C_DT8:DA17_G
-0.171
-0.147
0.214
-10.52
-5.793
6.054
1
6
C_DT9:DA16_G
-0.494
-0.366
-0.376
-6.45
-6.028
-1.919
1
8
C_DT11:DA14_G
-0.405
0.056
-0.069
6.591
-9.145
2.629
1
9
C_DT12:DA13_G
0.187
-0.079
0.148
8.1
-10.599
6.675
1
18
C_DT21:DA4_G
-0.048
-0.028
0.041
14.165
-6.236
11.165
1
19
K_DA4:DT21_O
0.388
-0.405
0.158
-14.818
-6.849
10.393
1
28
K_DA13:DT12_O
-0.016
-0.058
0.228
-8.058
-11.402
5.824
1
29
K_DA14:DT11_O
0.509
0.011
0.019
-6.955
-9.886
1.792
1
31
K_DA16:DT9_O
0.476
-0.369
-0.268
5.677
-6.081
-2.793
1
32
K_DA17:DT8_O
0.147
-0.117
0.328
9.91
-5.459
5.113
1
34
K_DA19:DT6_O
0.123
0.078
0.35
0.756
-1.925
0.843
1
35
K_DA20:DT5_O
-0.128
-0.033
0.386
5.079
0.134
14.575
1
30
K_DC15:DG10_O
1.103
-0.196
0.268
7.559
-0.367
10.918
1
33
K_DC18:DG7_O
0.366
0.065
0.006
16.354
-6.915
2.47
1
22
K_DG7:DC18_O
-0.85
-0.192
0.046
-17.139
-6.927
2.54
1
25
K_DG10:DC15_O
-1.21
0.298
0.259
-7.541
0.412
10.924
1
20
K_DT5:DA20_O
0.258
-0.617
0.396
-5.356
-0.61
14.656
1
21
K_DT6:DA19_O
-0.278
-0.475
0.376
-1.319
-2.483
0.89
1
23
K_DT8:DA17_O
-0.678
-0.082
0.332
-10.622
-5.095
5.126
1
24
K_DT9:DA16_O
-0.894
-0.066
-0.314
-6.133
-5.436
-2.884
1
26
K_DT11:DA14_O
-0.311
0.467
0.003
7.375
-9.209
1.763
1
27
K_DT12:DA13_O
0.459
0.162
0.25
8.796
-11.103
5.892
1
36
K_DT21:DA4_O
0.032
0.054
0.136
14.887
-6.076
10.271
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.