A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PD0282  PDB ID: 1KSX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA4:DT21_G0.0410.1510.007-14.173-6.26311.159
110C_DA13:DT12_G-0.354-0.0080.161-8.068-10.6066.67
111C_DA14:DT11_G0.3060.21-0.074-6.581-9.1692.634
113C_DA16:DT9_G0.597-0.216-0.3956.451-6.035-1.925
114C_DA17:DT8_G0.333-0.0620.21610.501-5.8056.059
116C_DA19:DT6_G0.175-0.0840.2420.603-2.5521.807
117C_DA20:DT5_G-0.151-0.1660.2844.561-0.38715.48
112C_DC15:DG10_G1.0780.0610.1598.178-0.00111.817
115C_DC18:DG7_G0.5480.005-0.09416.623-7.4823.449
14C_DG7:DC18_G-0.3660.003-0.112-16.637-7.4863.456
17C_DG10:DC15_G-1.082-0.1220.159-8.1870.02711.81
12C_DT5:DA20_G0.226-0.0010.262-4.558-0.4115.479
13C_DT6:DA19_G-0.0380.0360.228-0.615-2.5571.809
15C_DT8:DA17_G-0.171-0.1470.214-10.52-5.7936.054
16C_DT9:DA16_G-0.494-0.366-0.376-6.45-6.028-1.919
18C_DT11:DA14_G-0.4050.056-0.0696.591-9.1452.629
19C_DT12:DA13_G0.187-0.0790.1488.1-10.5996.675
118C_DT21:DA4_G-0.048-0.0280.04114.165-6.23611.165
119K_DA4:DT21_O0.388-0.4050.158-14.818-6.84910.393
128K_DA13:DT12_O-0.016-0.0580.228-8.058-11.4025.824
129K_DA14:DT11_O0.5090.0110.019-6.955-9.8861.792
131K_DA16:DT9_O0.476-0.369-0.2685.677-6.081-2.793
132K_DA17:DT8_O0.147-0.1170.3289.91-5.4595.113
134K_DA19:DT6_O0.1230.0780.350.756-1.9250.843
135K_DA20:DT5_O-0.128-0.0330.3865.0790.13414.575
130K_DC15:DG10_O1.103-0.1960.2687.559-0.36710.918
133K_DC18:DG7_O0.3660.0650.00616.354-6.9152.47
122K_DG7:DC18_O-0.85-0.1920.046-17.139-6.9272.54
125K_DG10:DC15_O-1.210.2980.259-7.5410.41210.924
120K_DT5:DA20_O0.258-0.6170.396-5.356-0.6114.656
121K_DT6:DA19_O-0.278-0.4750.376-1.319-2.4830.89
123K_DT8:DA17_O-0.678-0.0820.332-10.622-5.0955.126
124K_DT9:DA16_O-0.894-0.066-0.314-6.133-5.436-2.884
126K_DT11:DA14_O-0.3110.4670.0037.375-9.2091.763
127K_DT12:DA13_O0.4590.1620.258.796-11.1035.892
136K_DT21:DA4_O0.0320.0540.13614.887-6.07610.271

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.