1KSX: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PD0282 PDB ID: 1KSX

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	C_DA4:DT21_G	0.041	0.151	0.007	-14.173	-6.263	11.159
1	10	C_DA13:DT12_G	-0.354	-0.008	0.161	-8.068	-10.606	6.67
1	11	C_DA14:DT11_G	0.306	0.21	-0.074	-6.581	-9.169	2.634
1	13	C_DA16:DT9_G	0.597	-0.216	-0.395	6.451	-6.035	-1.925
1	14	C_DA17:DT8_G	0.333	-0.062	0.216	10.501	-5.805	6.059
1	16	C_DA19:DT6_G	0.175	-0.084	0.242	0.603	-2.552	1.807
1	17	C_DA20:DT5_G	-0.151	-0.166	0.284	4.561	-0.387	15.48
1	12	C_DC15:DG10_G	1.078	0.061	0.159	8.178	-0.001	11.817
1	15	C_DC18:DG7_G	0.548	0.005	-0.094	16.623	-7.482	3.449
1	4	C_DG7:DC18_G	-0.366	0.003	-0.112	-16.637	-7.486	3.456
1	7	C_DG10:DC15_G	-1.082	-0.122	0.159	-8.187	0.027	11.81
1	2	C_DT5:DA20_G	0.226	-0.001	0.262	-4.558	-0.41	15.479
1	3	C_DT6:DA19_G	-0.038	0.036	0.228	-0.615	-2.557	1.809
1	5	C_DT8:DA17_G	-0.171	-0.147	0.214	-10.52	-5.793	6.054
1	6	C_DT9:DA16_G	-0.494	-0.366	-0.376	-6.45	-6.028	-1.919
1	8	C_DT11:DA14_G	-0.405	0.056	-0.069	6.591	-9.145	2.629
1	9	C_DT12:DA13_G	0.187	-0.079	0.148	8.1	-10.599	6.675
1	18	C_DT21:DA4_G	-0.048	-0.028	0.041	14.165	-6.236	11.165
1	19	K_DA4:DT21_O	0.388	-0.405	0.158	-14.818	-6.849	10.393
1	28	K_DA13:DT12_O	-0.016	-0.058	0.228	-8.058	-11.402	5.824
1	29	K_DA14:DT11_O	0.509	0.011	0.019	-6.955	-9.886	1.792
1	31	K_DA16:DT9_O	0.476	-0.369	-0.268	5.677	-6.081	-2.793
1	32	K_DA17:DT8_O	0.147	-0.117	0.328	9.91	-5.459	5.113
1	34	K_DA19:DT6_O	0.123	0.078	0.35	0.756	-1.925	0.843
1	35	K_DA20:DT5_O	-0.128	-0.033	0.386	5.079	0.134	14.575
1	30	K_DC15:DG10_O	1.103	-0.196	0.268	7.559	-0.367	10.918
1	33	K_DC18:DG7_O	0.366	0.065	0.006	16.354	-6.915	2.47
1	22	K_DG7:DC18_O	-0.85	-0.192	0.046	-17.139	-6.927	2.54
1	25	K_DG10:DC15_O	-1.21	0.298	0.259	-7.541	0.412	10.924
1	20	K_DT5:DA20_O	0.258	-0.617	0.396	-5.356	-0.61	14.656
1	21	K_DT6:DA19_O	-0.278	-0.475	0.376	-1.319	-2.483	0.89
1	23	K_DT8:DA17_O	-0.678	-0.082	0.332	-10.622	-5.095	5.126
1	24	K_DT9:DA16_O	-0.894	-0.066	-0.314	-6.133	-5.436	-2.884
1	26	K_DT11:DA14_O	-0.311	0.467	0.003	7.375	-9.209	1.763
1	27	K_DT12:DA13_O	0.459	0.162	0.25	8.796	-11.103	5.892
1	36	K_DT21:DA4_O	0.032	0.054	0.136	14.887	-6.076	10.271

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.