1KSX: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PD0282 PDB ID: 1KSX

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_DA4DT5:DA20DT21_GG	0.281	-0.531	3.143	-3.236	2.916	26.573	-1.848	-1.39	3.013	6.291	6.981	26.921
1	10	CC_DA13DA14:DT11DT12_GG	-0.457	-0.081	3.285	1.673	5.473	34.821	-0.945	1.002	3.211	9.069	-2.772	35.274
1	11	CC_DA14DC15:DG10DT11_GG	1.105	-0.856	2.915	-2.524	4.233	31.274	-2.242	-2.427	2.684	7.791	4.645	31.65
1	13	CC_DA16DA17:DT8DT9_GG	0.482	-0.696	3.001	-3.928	5.918	27.939	-2.571	-1.747	2.708	12.013	7.973	28.81
1	14	CC_DA17DC18:DG7DT8_GG	0.066	-0.862	3.138	0.038	5.011	27.63	-2.882	-0.128	2.938	10.385	-0.079	28.072
1	16	CC_DA19DA20:DT5DT6_GG	0.713	-0.571	3.193	-2.161	7.138	24.365	-3.226	-2.201	2.84	16.428	4.974	25.464
1	17	CC_DA20DT21:DA4DT5_GG	-0.281	-0.531	3.144	3.238	2.917	26.572	-1.849	1.391	3.014	6.292	-6.986	26.921
1	12	CC_DC15DA16:DT9DG10_GG	-0.808	0.201	3.444	6.25	-0.302	36.526	0.359	2.138	3.265	-0.477	-9.882	37.04
1	15	CC_DC18DA19:DT6DG7_GG	-0.42	-0.119	3.688	0.203	-1.803	42.034	0.044	0.608	3.688	-2.512	-0.282	42.071
1	4	CC_DG7DT8:DA17DC18_GG	-0.066	-0.863	3.138	-0.034	5.003	27.625	-2.882	0.129	2.939	10.369	0.071	28.066
1	7	CC_DG10DT11:DA14DC15_GG	-1.104	-0.856	2.915	2.52	4.223	31.263	-2.242	2.427	2.684	7.776	-4.641	31.638
1	2	CC_DT5DT6:DA19DA20_GG	-0.712	-0.571	3.194	2.158	7.135	24.36	-3.226	2.2	2.841	16.424	-4.967	25.458
1	3	CC_DT6DG7:DC18DA19_GG	0.42	-0.119	3.688	-0.207	-1.799	42.036	0.044	-0.61	3.688	-2.507	0.288	42.073
1	5	CC_DT8DT9:DA16DA17_GG	-0.482	-0.696	3.001	3.941	5.928	27.943	-2.571	1.748	2.707	12.031	-7.997	28.818
1	6	CC_DT9DG10:DC15DA16_GG	0.807	0.202	3.445	-6.256	-0.298	36.53	0.359	-2.138	3.266	-0.471	9.89	37.045
1	8	CC_DT11DT12:DA13DA14_GG	0.457	-0.081	3.285	-1.661	5.481	34.833	-0.946	-1.0	3.211	9.08	2.752	35.286
1	9	CC_DT12DA13:DT12DA13_GG	0.0	1.708	3.919	-0.006	-7.73	46.534	2.869	-0.001	3.608	-9.706	0.008	47.137
1	18	KK_DA4DT5:DA20DT21_OO	0.279	-0.531	3.144	-3.226	2.877	26.576	-1.84	-1.383	3.016	6.206	6.959	26.919
1	27	KK_DA13DA14:DT11DT12_OO	-0.457	-0.086	3.286	1.655	5.445	34.835	-0.948	0.999	3.212	9.02	-2.742	35.283
1	28	KK_DA14DC15:DG10DT11_OO	1.105	-0.859	2.916	-2.487	4.175	31.288	-2.239	-2.421	2.689	7.682	4.576	31.654
1	30	KK_DA16DA17:DT8DT9_OO	0.485	-0.694	2.999	-3.923	5.884	27.938	-2.561	-1.753	2.708	11.946	7.966	28.802
1	31	KK_DA17DC18:DG7DT8_OO	0.07	-0.865	3.136	0.061	4.973	27.614	-2.883	-0.131	2.938	10.313	-0.126	28.049
1	33	KK_DA19DA20:DT5DT6_OO	0.713	-0.57	3.193	-2.145	7.121	24.364	-3.221	-2.198	2.842	16.39	4.937	25.457
1	34	KK_DA20DT21:DA4DT5_OO	-0.279	-0.532	3.143	3.223	2.886	26.565	-1.844	1.384	3.015	6.228	-6.956	26.908
1	29	KK_DC15DA16:DT9DG10_OO	-0.804	0.201	3.444	6.248	-0.298	36.522	0.357	2.133	3.265	-0.471	-9.88	37.035
1	32	KK_DC18DA19:DT6DG7_OO	-0.416	-0.12	3.69	0.248	-1.756	42.042	0.038	0.609	3.689	-2.447	-0.346	42.078
1	21	KK_DG7DT8:DA17DC18_OO	-0.07	-0.864	3.137	-0.054	4.968	27.608	-2.881	0.132	2.939	10.305	0.111	28.043
1	24	KK_DG10DT11:DA14DC15_OO	-1.106	-0.859	2.914	2.492	4.166	31.251	-2.24	2.427	2.686	7.675	-4.592	31.616
1	19	KK_DT5DT6:DA19DA20_OO	-0.712	-0.57	3.193	2.156	7.116	24.37	-3.219	2.2	2.842	16.375	-4.962	25.463
1	20	KK_DT6DG7:DC18DA19_OO	0.417	-0.121	3.69	-0.255	-1.74	42.067	0.035	-0.61	3.689	-2.423	0.354	42.102
1	22	KK_DT8DT9:DA16DA17_OO	-0.487	-0.696	3.001	3.914	5.889	27.936	-2.566	1.755	2.708	11.958	-7.948	28.799
1	23	KK_DT9DG10:DC15DA16_OO	0.806	0.201	3.445	-6.247	-0.301	36.524	0.358	-2.136	3.266	-0.475	9.878	37.037
1	25	KK_DT11DT12:DA13DA14_OO	0.458	-0.086	3.284	-1.653	5.452	34.84	-0.949	-1.001	3.21	9.031	2.738	35.288
1	26	KK_DT12DA13:DT12DA13_OO	-0.001	1.706	3.919	-0.002	-7.704	46.523	2.866	0.0	3.609	-9.675	0.002	47.122

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.