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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0282
PDB ID:
1KSX
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
CC_DA4DT5:DA20DT21_GG
0.281
-0.531
3.143
-3.236
2.916
26.573
-1.848
-1.39
3.013
6.291
6.981
26.921
1
10
CC_DA13DA14:DT11DT12_GG
-0.457
-0.081
3.285
1.673
5.473
34.821
-0.945
1.002
3.211
9.069
-2.772
35.274
1
11
CC_DA14DC15:DG10DT11_GG
1.105
-0.856
2.915
-2.524
4.233
31.274
-2.242
-2.427
2.684
7.791
4.645
31.65
1
13
CC_DA16DA17:DT8DT9_GG
0.482
-0.696
3.001
-3.928
5.918
27.939
-2.571
-1.747
2.708
12.013
7.973
28.81
1
14
CC_DA17DC18:DG7DT8_GG
0.066
-0.862
3.138
0.038
5.011
27.63
-2.882
-0.128
2.938
10.385
-0.079
28.072
1
16
CC_DA19DA20:DT5DT6_GG
0.713
-0.571
3.193
-2.161
7.138
24.365
-3.226
-2.201
2.84
16.428
4.974
25.464
1
17
CC_DA20DT21:DA4DT5_GG
-0.281
-0.531
3.144
3.238
2.917
26.572
-1.849
1.391
3.014
6.292
-6.986
26.921
1
12
CC_DC15DA16:DT9DG10_GG
-0.808
0.201
3.444
6.25
-0.302
36.526
0.359
2.138
3.265
-0.477
-9.882
37.04
1
15
CC_DC18DA19:DT6DG7_GG
-0.42
-0.119
3.688
0.203
-1.803
42.034
0.044
0.608
3.688
-2.512
-0.282
42.071
1
4
CC_DG7DT8:DA17DC18_GG
-0.066
-0.863
3.138
-0.034
5.003
27.625
-2.882
0.129
2.939
10.369
0.071
28.066
1
7
CC_DG10DT11:DA14DC15_GG
-1.104
-0.856
2.915
2.52
4.223
31.263
-2.242
2.427
2.684
7.776
-4.641
31.638
1
2
CC_DT5DT6:DA19DA20_GG
-0.712
-0.571
3.194
2.158
7.135
24.36
-3.226
2.2
2.841
16.424
-4.967
25.458
1
3
CC_DT6DG7:DC18DA19_GG
0.42
-0.119
3.688
-0.207
-1.799
42.036
0.044
-0.61
3.688
-2.507
0.288
42.073
1
5
CC_DT8DT9:DA16DA17_GG
-0.482
-0.696
3.001
3.941
5.928
27.943
-2.571
1.748
2.707
12.031
-7.997
28.818
1
6
CC_DT9DG10:DC15DA16_GG
0.807
0.202
3.445
-6.256
-0.298
36.53
0.359
-2.138
3.266
-0.471
9.89
37.045
1
8
CC_DT11DT12:DA13DA14_GG
0.457
-0.081
3.285
-1.661
5.481
34.833
-0.946
-1.0
3.211
9.08
2.752
35.286
1
9
CC_DT12DA13:DT12DA13_GG
0.0
1.708
3.919
-0.006
-7.73
46.534
2.869
-0.001
3.608
-9.706
0.008
47.137
1
18
KK_DA4DT5:DA20DT21_OO
0.279
-0.531
3.144
-3.226
2.877
26.576
-1.84
-1.383
3.016
6.206
6.959
26.919
1
27
KK_DA13DA14:DT11DT12_OO
-0.457
-0.086
3.286
1.655
5.445
34.835
-0.948
0.999
3.212
9.02
-2.742
35.283
1
28
KK_DA14DC15:DG10DT11_OO
1.105
-0.859
2.916
-2.487
4.175
31.288
-2.239
-2.421
2.689
7.682
4.576
31.654
1
30
KK_DA16DA17:DT8DT9_OO
0.485
-0.694
2.999
-3.923
5.884
27.938
-2.561
-1.753
2.708
11.946
7.966
28.802
1
31
KK_DA17DC18:DG7DT8_OO
0.07
-0.865
3.136
0.061
4.973
27.614
-2.883
-0.131
2.938
10.313
-0.126
28.049
1
33
KK_DA19DA20:DT5DT6_OO
0.713
-0.57
3.193
-2.145
7.121
24.364
-3.221
-2.198
2.842
16.39
4.937
25.457
1
34
KK_DA20DT21:DA4DT5_OO
-0.279
-0.532
3.143
3.223
2.886
26.565
-1.844
1.384
3.015
6.228
-6.956
26.908
1
29
KK_DC15DA16:DT9DG10_OO
-0.804
0.201
3.444
6.248
-0.298
36.522
0.357
2.133
3.265
-0.471
-9.88
37.035
1
32
KK_DC18DA19:DT6DG7_OO
-0.416
-0.12
3.69
0.248
-1.756
42.042
0.038
0.609
3.689
-2.447
-0.346
42.078
1
21
KK_DG7DT8:DA17DC18_OO
-0.07
-0.864
3.137
-0.054
4.968
27.608
-2.881
0.132
2.939
10.305
0.111
28.043
1
24
KK_DG10DT11:DA14DC15_OO
-1.106
-0.859
2.914
2.492
4.166
31.251
-2.24
2.427
2.686
7.675
-4.592
31.616
1
19
KK_DT5DT6:DA19DA20_OO
-0.712
-0.57
3.193
2.156
7.116
24.37
-3.219
2.2
2.842
16.375
-4.962
25.463
1
20
KK_DT6DG7:DC18DA19_OO
0.417
-0.121
3.69
-0.255
-1.74
42.067
0.035
-0.61
3.689
-2.423
0.354
42.102
1
22
KK_DT8DT9:DA16DA17_OO
-0.487
-0.696
3.001
3.914
5.889
27.936
-2.566
1.755
2.708
11.958
-7.948
28.799
1
23
KK_DT9DG10:DC15DA16_OO
0.806
0.201
3.445
-6.247
-0.301
36.524
0.358
-2.136
3.266
-0.475
9.878
37.037
1
25
KK_DT11DT12:DA13DA14_OO
0.458
-0.086
3.284
-1.653
5.452
34.84
-0.949
-1.001
3.21
9.031
2.738
35.288
1
26
KK_DT12DA13:DT12DA13_OO
-0.001
1.706
3.919
-0.002
-7.704
46.523
2.866
0.0
3.609
-9.675
0.002
47.122
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.