1KX5: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311

Search for released structures

NDB ID: PD0287 PDB ID: 1KX5

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	I_DA-73:DT73_J	-0.324	-0.578	-0.336	-3.796	4.482	-0.73
1	4	I_DA-70:DT70_J	0.066	-0.106	-0.326	7.185	-14.35	5.752
1	5	I_DA-69:DT69_J	-0.003	-0.1	0.191	3.607	-10.754	1.667
1	7	I_DA-67:DT67_J	0.343	-0.049	0.485	5.135	-15.523	0.19
1	11	I_DA-63:DT63_J	0.569	0.003	0.178	4.212	-7.335	-1.951
1	17	I_DA-57:DT57_J	0.008	0.274	0.498	14.009	-15.003	-3.06
1	19	I_DA-55:DT55_J	0.396	-0.018	0.058	-4.755	-12.701	2.234
1	21	I_DA-53:DT53_J	-0.183	-0.36	-0.194	-8.183	-7.486	6.851
1	24	I_DA-50:DT50_J	-0.021	-0.051	-0.04	-8.724	-10.564	1.438
1	27	I_DA-47:DT47_J	-0.008	0.161	0.617	19.04	-23.079	1.234
1	28	I_DA-46:DT46_J	0.228	0.004	0.319	10.043	-17.05	-4.697
1	29	I_DA-45:DT45_J	0.458	0.09	-0.228	-1.279	-25.862	0.903
1	30	I_DA-44:DT44_J	0.103	-0.241	-0.484	-0.741	-8.059	-1.457
1	35	I_DA-39:DT39_J	0.203	0.042	-0.145	-10.496	-17.84	1.762
1	41	I_DA-33:DT33_J	0.111	0.007	0.114	10.009	-17.976	4.032
1	42	I_DA-32:DT32_J	-0.027	0.265	-0.087	6.718	-20.835	1.645
1	43	I_DA-31:DT31_J	0.121	0.382	0.296	10.697	-13.904	1.885
1	51	I_DA-23:DT23_J	0.494	-0.027	-0.423	-3.695	-3.769	-6.095
1	54	I_DA-20:DT20_J	0.327	-0.449	-0.796	-13.143	-14.253	4.442
1	55	I_DA-19:DT19_J	1.351	0.142	-0.704	-10.292	-10.258	11.431
1	56	I_DA-18:DT18_J	0.003	0.051	0.22	2.782	-22.405	-2.261
1	57	I_DA-17:DT17_J	0.152	0.142	0.005	-2.678	-21.979	-4.193
1	61	I_DA-13:DT13_J	-0.129	-0.218	-0.179	-11.719	-11.218	1.138
1	67	I_DA-7:DT7_J	0.349	-0.279	-0.155	8.312	-13.024	0.6
1	73	I_DA-1:DT1_J	-0.083	-0.069	0.041	-1.483	-8.877	1.177
1	74	I_DA0:DT0_J	0.64	-0.175	0.293	-2.418	-7.412	0.538
1	78	I_DA4:DT-4_J	0.222	-0.035	0.123	0.34	-21.701	-3.879
1	83	I_DA9:DT-9_J	0.151	-0.208	-0.191	1.965	-12.19	0.899
1	84	I_DA10:DT-10_J	0.034	0.093	-0.362	3.16	-18.866	6.002
1	86	I_DA12:DT-12_J	0.031	-0.035	-0.011	-1.943	-12.45	4.219
1	96	I_DA22:DT-22_J	0.007	-0.235	-0.358	-12.455	-8.093	-2.243
1	100	I_DA26:DT-26_J	-0.02	0.022	0.11	4.032	-27.61	0.13
1	103	I_DA29:DT-29_J	-0.187	-0.035	-0.239	-4.349	-10.672	9.972
1	110	I_DA36:DT-36_J	-0.24	-0.215	0.337	8.512	-19.049	0.836
1	111	I_DA37:DT-37_J	0.628	-0.104	0.547	19.0	-11.162	-3.983
1	112	I_DA38:DT-38_J	0.069	-0.112	-0.74	-6.248	-14.42	-1.831
1	114	I_DA40:DT-40_J	0.306	0.426	-0.466	-5.266	-2.012	3.356
1	116	I_DA42:DT-42_J	-0.519	0.429	0.045	1.634	-10.897	7.705
1	125	I_DA51:DT-51_J	-0.092	-0.039	0.275	5.996	-8.806	1.63
1	127	I_DA54:DT-54_J	-0.394	-0.123	0.354	1.907	-3.329	8.993
1	133	I_DA60:DT-60_J	-0.149	-0.292	-0.294	-6.265	-16.278	3.729
1	139	I_DA66:DT-66_J	-0.241	-0.169	-0.128	-2.613	-10.405	3.289
1	141	I_DA68:DT-68_J	-0.026	-0.317	0.169	-5.185	-9.008	3.893
1	145	I_DA72:DT-72_J	0.226	-0.174	-0.178	4.337	-2.041	-1.905
1	3	I_DC-71:DG71_J	-0.142	-0.03	-0.364	2.765	-4.612	1.046
1	9	I_DC-65:DG65_J	0.36	-0.097	0.04	-1.166	-8.492	3.254
1	10	I_DC-64:DG64_J	0.254	-0.242	-0.159	1.261	-0.865	-4.525
1	12	I_DC-62:DG62_J	-0.129	0.022	0.016	1.856	-6.279	4.936
1	13	I_DC-61:DG61_J	0.282	-0.064	0.361	-5.879	-11.399	5.606
1	16	I_DC-58:DG58_J	0.269	-0.077	-0.116	5.84	-5.872	-0.94
1	22	I_DC-52:DG52_J	-0.039	0.056	-0.135	-2.483	-10.095	-2.82
1	25	I_DC-49:DG49_J	-0.141	0.008	-0.111	1.293	-11.612	-1.571
1	26	I_DC-48:DG48_J	0.063	-0.204	-0.086	2.227	-11.82	-1.436
1	44	I_DC-30:DG30_J	0.218	0.157	-0.556	15.162	-13.079	3.185
1	47	I_DC-27:DG27_J	0.285	-0.419	0.126	-2.541	-8.536	-4.864
1	49	I_DC-25:DG25_J	0.601	-0.078	-0.16	-2.369	-8.813	2.873
1	50	I_DC-24:DG24_J	0.571	-0.045	-0.27	0.997	-13.274	-0.244
1	53	I_DC-21:DG21_J	0.279	-0.508	-0.351	10.102	-12.904	1.277
1	60	I_DC-14:DG14_J	-0.347	-0.243	-0.119	-9.573	-9.037	1.189
1	66	I_DC-8:DG8_J	0.139	-0.161	-0.319	5.213	-8.096	1.716
1	69	I_DC-5:DG5_J	0.136	-0.153	0.278	-1.367	-8.792	-2.957
1	76	I_DC2:DG-2_J	0.188	-0.112	0.016	-0.556	-13.139	-1.082
1	77	I_DC3:DG-3_J	0.268	-0.133	0.031	2.164	-3.554	0.809
1	80	I_DC6:DG-6_J	0.16	-0.156	0.233	0.055	-26.249	-1.886
1	85	I_DC11:DG-11_J	0.201	-0.08	-0.038	-0.818	-14.516	4.37
1	89	I_DC15:DG-15_J	0.265	-0.165	0.63	3.703	-28.018	-3.368
1	90	I_DC16:DG-16_J	0.276	-0.231	0.418	-8.132	-14.543	-0.111
1	102	I_DC28:DG-28_J	0.384	-0.076	0.081	5.192	-24.657	2.056
1	108	I_DC34:DG-34_J	-0.032	-0.118	-0.15	-4.335	-4.907	0.826
1	109	I_DC35:DG-35_J	0.396	-0.381	0.363	10.388	-15.493	-7.303
1	115	I_DC41:DG-41_J	0.186	-0.043	0.209	3.429	-0.682	6.033
1	117	I_DC43:DG-43_J	0.483	0.196	-0.442	0.066	-14.305	5.497
1	129	I_DC56:DG-56_J	-0.142	-0.049	0.811	-16.114	-16.917	-4.735
1	132	I_DC59:DG-59_J	0.918	-0.071	0.033	10.987	-11.493	-1.571
1	15	I_DG-59:DC59_J	-0.761	-0.091	0.179	-9.016	-3.958	1.385
1	18	I_DG-56:DC56_J	-0.126	0.128	0.276	8.366	-18.284	-3.149
1	31	I_DG-43:DC43_J	0.302	-0.221	-0.966	-20.742	-13.063	-1.446
1	33	I_DG-41:DC41_J	-0.498	0.054	1.14	-5.26	-2.836	7.071
1	39	I_DG-35:DC35_J	-0.198	-0.148	0.442	1.87	-12.415	-0.836
1	40	I_DG-34:DC34_J	-0.273	-0.134	-0.234	4.301	-3.43	1.988
1	46	I_DG-28:DC28_J	-0.028	-0.228	-0.023	-2.561	-22.444	-1.776
1	58	I_DG-16:DC16_J	-0.499	-0.214	0.641	18.223	2.914	0.764
1	59	I_DG-15:DC15_J	0.278	0.258	0.747	0.451	-37.173	-6.301
1	63	I_DG-11:DC11_J	-0.373	-0.153	-0.556	-14.6	-12.582	6.296
1	68	I_DG-6:DC6_J	-0.211	-0.064	0.278	0.758	-24.762	-0.045
1	71	I_DG-3:DC3_J	-0.426	-0.148	-0.099	-4.199	-3.822	2.499
1	72	I_DG-2:DC2_J	0.277	-0.119	0.139	5.051	-7.248	-0.477
1	79	I_DG5:DC-5_J	-0.233	-0.179	0.345	5.219	-4.556	-2.172
1	82	I_DG8:DC-8_J	-0.133	-0.089	0.183	4.287	-5.472	2.119
1	88	I_DG14:DC-14_J	-0.132	-0.151	0.08	-0.629	-3.467	0.669
1	95	I_DG21:DC-21_J	-0.336	0.107	-1.002	-20.512	-10.336	2.265
1	98	I_DG24:DC-24_J	0.078	-0.166	0.409	5.662	-11.434	-3.228
1	99	I_DG25:DC-25_J	-0.599	-0.098	-0.478	-2.609	-4.565	1.998
1	101	I_DG27:DC-27_J	0.171	-0.038	0.366	3.657	-8.26	0.316
1	104	I_DG30:DC-30_J	-0.629	0.355	-0.319	-14.877	-11.669	5.547
1	122	I_DG48:DC-48_J	-0.056	-0.109	-0.097	1.237	1.153	-1.323
1	123	I_DG49:DC-49_J	-0.562	0.04	0.006	-0.164	-12.412	2.142
1	126	I_DG52:DC-52_J	-0.545	-0.394	-0.978	-4.13	-16.66	-1.603
1	131	I_DG58:DC-58_J	-0.26	-0.112	0.017	-7.499	-6.387	1.653
1	134	I_DG61:DC-61_J	-0.272	0.094	0.09	6.502	-15.595	7.435
1	135	I_DG62:DC-62_J	-0.483	-0.255	-0.087	-6.013	-10.146	0.879
1	137	I_DG64:DC-64_J	-0.358	-0.374	-0.307	-1.442	-8.837	-3.356
1	138	I_DG65:DC-65_J	0.25	-0.274	-0.205	5.82	-10.22	-0.02
1	144	I_DG71:DC-71_J	-0.208	-0.224	-0.754	-3.159	0.028	-2.537
1	2	I_DT-72:DA72_J	-0.541	-0.144	-0.64	6.21	-10.273	-2.306
1	6	I_DT-68:DA68_J	0.002	-0.405	0.102	9.234	-6.743	2.165
1	8	I_DT-66:DA66_J	0.204	-0.083	0.299	2.466	-10.16	0.335
1	14	I_DT-60:DA60_J	-0.402	-0.132	0.35	-13.252	-15.5	2.227
1	20	I_DT-54:DA54_J	0.736	-0.29	-0.331	-1.076	-7.503	5.084
1	23	I_DT-51:DA51_J	0.172	0.2	0.23	-0.522	-6.517	3.574
1	32	I_DT-42:DA42_J	-0.216	0.343	-0.528	-2.867	-10.098	4.433
1	34	I_DT-40:DA40_J	-0.377	0.018	-0.145	5.363	-2.191	-3.359
1	36	I_DT-38:DA38_J	0.071	-0.144	0.057	-0.024	-7.782	0.708
1	37	I_DT-37:DA37_J	-0.082	-0.181	0.159	-16.019	-12.748	-3.936
1	38	I_DT-36:DA36_J	-0.105	-0.081	0.29	-3.933	-18.122	2.576
1	45	I_DT-29:DA29_J	0.113	-0.04	0.01	6.691	-12.824	8.0
1	48	I_DT-26:DA26_J	-0.01	-0.098	0.351	-5.214	-26.4	-1.924
1	52	I_DT-22:DA22_J	-1.248	0.182	-0.516	8.389	-7.617	-1.249
1	62	I_DT-12:DA12_J	-0.309	-0.017	0.018	-4.665	-13.466	0.738
1	64	I_DT-10:DA10_J	-0.114	-0.112	-0.13	-0.75	-15.698	3.628
1	65	I_DT-9:DA9_J	-0.133	-0.078	0.068	-4.708	-12.74	1.712
1	70	I_DT-4:DA4_J	-0.176	-0.11	0.267	-2.512	-22.3	-3.305
1	75	I_DT1:DA-1_J	0.115	-0.079	0.003	0.927	-13.009	2.497
1	81	I_DT7:DA-7_J	0.037	-0.182	-0.144	-2.554	-9.606	0.223
1	87	I_DT13:DA-13_J	-0.144	-0.137	0.024	3.107	-10.852	0.195
1	91	I_DT17:DA-17_J	-0.334	-0.132	0.065	-11.838	-17.496	1.218
1	92	I_DT18:DA-18_J	-0.02	-0.086	0.009	-1.978	-13.396	0.367
1	93	I_DT19:DA-19_J	-0.117	0.028	-0.127	-6.548	-14.038	6.101
1	94	I_DT20:DA-20_J	0.113	-0.126	-0.377	-3.503	-10.508	6.877
1	97	I_DT23:DA-23_J	-0.489	0.071	-0.089	1.822	-6.419	0.268
1	105	I_DT31:DA-31_J	-0.331	0.175	-0.151	-4.298	-13.211	-5.298
1	106	I_DT32:DA-32_J	-0.139	0.341	0.017	-3.573	-11.612	4.881
1	107	I_DT33:DA-33_J	0.292	0.18	-0.109	-11.627	-22.231	-0.645
1	113	I_DT39:DA-39_J	-0.774	0.45	-0.248	5.902	-15.38	4.275
1	118	I_DT44:DA-44_J	-0.778	0.086	0.043	3.651	-5.052	2.772
1	119	I_DT45:DA-45_J	0.059	0.088	0.34	-5.879	-21.33	2.701
1	120	I_DT46:DA-46_J	-0.421	0.055	0.096	-18.818	-15.548	-1.34
1	121	I_DT47:DA-47_J	0.116	0.028	-0.232	-9.243	-12.018	1.008
1	124	I_DT50:DA-50_J	-0.609	0.188	0.047	5.727	-7.748	2.479
1	128	I_DT55:DA-55_J	-0.409	0.128	-0.183	5.107	-7.751	-3.413
1	130	I_DT57:DA-57_J	0.277	0.049	1.063	-14.454	-14.785	-2.075
1	136	I_DT63:DA-63_J	-0.271	0.052	-0.336	-3.515	-7.225	2.47
1	140	I_DT67:DA-67_J	0.035	-0.24	-0.125	5.135	-5.864	-0.638
1	142	I_DT69:DA-69_J	0.101	-0.133	0.131	-2.372	-16.606	4.162
1	143	I_DT70:DA-70_J	0.06	-0.131	-0.205	0.944	-9.836	1.56
1	146	I_DT73:DA-73_J	0.332	-0.217	-0.476	8.898	-2.664	4.651

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.