A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
Search for released structures

NDB ID: PD0287  PDB ID: 1KX5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.324-0.578-0.336-3.7964.482-0.73
14I_DA-70:DT70_J0.066-0.106-0.3267.185-14.355.752
15I_DA-69:DT69_J-0.003-0.10.1913.607-10.7541.667
17I_DA-67:DT67_J0.343-0.0490.4855.135-15.5230.19
111I_DA-63:DT63_J0.5690.0030.1784.212-7.335-1.951
117I_DA-57:DT57_J0.0080.2740.49814.009-15.003-3.06
119I_DA-55:DT55_J0.396-0.0180.058-4.755-12.7012.234
121I_DA-53:DT53_J-0.183-0.36-0.194-8.183-7.4866.851
124I_DA-50:DT50_J-0.021-0.051-0.04-8.724-10.5641.438
127I_DA-47:DT47_J-0.0080.1610.61719.04-23.0791.234
128I_DA-46:DT46_J0.2280.0040.31910.043-17.05-4.697
129I_DA-45:DT45_J0.4580.09-0.228-1.279-25.8620.903
130I_DA-44:DT44_J0.103-0.241-0.484-0.741-8.059-1.457
135I_DA-39:DT39_J0.2030.042-0.145-10.496-17.841.762
141I_DA-33:DT33_J0.1110.0070.11410.009-17.9764.032
142I_DA-32:DT32_J-0.0270.265-0.0876.718-20.8351.645
143I_DA-31:DT31_J0.1210.3820.29610.697-13.9041.885
151I_DA-23:DT23_J0.494-0.027-0.423-3.695-3.769-6.095
154I_DA-20:DT20_J0.327-0.449-0.796-13.143-14.2534.442
155I_DA-19:DT19_J1.3510.142-0.704-10.292-10.25811.431
156I_DA-18:DT18_J0.0030.0510.222.782-22.405-2.261
157I_DA-17:DT17_J0.1520.1420.005-2.678-21.979-4.193
161I_DA-13:DT13_J-0.129-0.218-0.179-11.719-11.2181.138
167I_DA-7:DT7_J0.349-0.279-0.1558.312-13.0240.6
173I_DA-1:DT1_J-0.083-0.0690.041-1.483-8.8771.177
174I_DA0:DT0_J0.64-0.1750.293-2.418-7.4120.538
178I_DA4:DT-4_J0.222-0.0350.1230.34-21.701-3.879
183I_DA9:DT-9_J0.151-0.208-0.1911.965-12.190.899
184I_DA10:DT-10_J0.0340.093-0.3623.16-18.8666.002
186I_DA12:DT-12_J0.031-0.035-0.011-1.943-12.454.219
196I_DA22:DT-22_J0.007-0.235-0.358-12.455-8.093-2.243
1100I_DA26:DT-26_J-0.020.0220.114.032-27.610.13
1103I_DA29:DT-29_J-0.187-0.035-0.239-4.349-10.6729.972
1110I_DA36:DT-36_J-0.24-0.2150.3378.512-19.0490.836
1111I_DA37:DT-37_J0.628-0.1040.54719.0-11.162-3.983
1112I_DA38:DT-38_J0.069-0.112-0.74-6.248-14.42-1.831
1114I_DA40:DT-40_J0.3060.426-0.466-5.266-2.0123.356
1116I_DA42:DT-42_J-0.5190.4290.0451.634-10.8977.705
1125I_DA51:DT-51_J-0.092-0.0390.2755.996-8.8061.63
1127I_DA54:DT-54_J-0.394-0.1230.3541.907-3.3298.993
1133I_DA60:DT-60_J-0.149-0.292-0.294-6.265-16.2783.729
1139I_DA66:DT-66_J-0.241-0.169-0.128-2.613-10.4053.289
1141I_DA68:DT-68_J-0.026-0.3170.169-5.185-9.0083.893
1145I_DA72:DT-72_J0.226-0.174-0.1784.337-2.041-1.905
13I_DC-71:DG71_J-0.142-0.03-0.3642.765-4.6121.046
19I_DC-65:DG65_J0.36-0.0970.04-1.166-8.4923.254
110I_DC-64:DG64_J0.254-0.242-0.1591.261-0.865-4.525
112I_DC-62:DG62_J-0.1290.0220.0161.856-6.2794.936
113I_DC-61:DG61_J0.282-0.0640.361-5.879-11.3995.606
116I_DC-58:DG58_J0.269-0.077-0.1165.84-5.872-0.94
122I_DC-52:DG52_J-0.0390.056-0.135-2.483-10.095-2.82
125I_DC-49:DG49_J-0.1410.008-0.1111.293-11.612-1.571
126I_DC-48:DG48_J0.063-0.204-0.0862.227-11.82-1.436
144I_DC-30:DG30_J0.2180.157-0.55615.162-13.0793.185
147I_DC-27:DG27_J0.285-0.4190.126-2.541-8.536-4.864
149I_DC-25:DG25_J0.601-0.078-0.16-2.369-8.8132.873
150I_DC-24:DG24_J0.571-0.045-0.270.997-13.274-0.244
153I_DC-21:DG21_J0.279-0.508-0.35110.102-12.9041.277
160I_DC-14:DG14_J-0.347-0.243-0.119-9.573-9.0371.189
166I_DC-8:DG8_J0.139-0.161-0.3195.213-8.0961.716
169I_DC-5:DG5_J0.136-0.1530.278-1.367-8.792-2.957
176I_DC2:DG-2_J0.188-0.1120.016-0.556-13.139-1.082
177I_DC3:DG-3_J0.268-0.1330.0312.164-3.5540.809
180I_DC6:DG-6_J0.16-0.1560.2330.055-26.249-1.886
185I_DC11:DG-11_J0.201-0.08-0.038-0.818-14.5164.37
189I_DC15:DG-15_J0.265-0.1650.633.703-28.018-3.368
190I_DC16:DG-16_J0.276-0.2310.418-8.132-14.543-0.111
1102I_DC28:DG-28_J0.384-0.0760.0815.192-24.6572.056
1108I_DC34:DG-34_J-0.032-0.118-0.15-4.335-4.9070.826
1109I_DC35:DG-35_J0.396-0.3810.36310.388-15.493-7.303
1115I_DC41:DG-41_J0.186-0.0430.2093.429-0.6826.033
1117I_DC43:DG-43_J0.4830.196-0.4420.066-14.3055.497
1129I_DC56:DG-56_J-0.142-0.0490.811-16.114-16.917-4.735
1132I_DC59:DG-59_J0.918-0.0710.03310.987-11.493-1.571
115I_DG-59:DC59_J-0.761-0.0910.179-9.016-3.9581.385
118I_DG-56:DC56_J-0.1260.1280.2768.366-18.284-3.149
131I_DG-43:DC43_J0.302-0.221-0.966-20.742-13.063-1.446
133I_DG-41:DC41_J-0.4980.0541.14-5.26-2.8367.071
139I_DG-35:DC35_J-0.198-0.1480.4421.87-12.415-0.836
140I_DG-34:DC34_J-0.273-0.134-0.2344.301-3.431.988
146I_DG-28:DC28_J-0.028-0.228-0.023-2.561-22.444-1.776
158I_DG-16:DC16_J-0.499-0.2140.64118.2232.9140.764
159I_DG-15:DC15_J0.2780.2580.7470.451-37.173-6.301
163I_DG-11:DC11_J-0.373-0.153-0.556-14.6-12.5826.296
168I_DG-6:DC6_J-0.211-0.0640.2780.758-24.762-0.045
171I_DG-3:DC3_J-0.426-0.148-0.099-4.199-3.8222.499
172I_DG-2:DC2_J0.277-0.1190.1395.051-7.248-0.477
179I_DG5:DC-5_J-0.233-0.1790.3455.219-4.556-2.172
182I_DG8:DC-8_J-0.133-0.0890.1834.287-5.4722.119
188I_DG14:DC-14_J-0.132-0.1510.08-0.629-3.4670.669
195I_DG21:DC-21_J-0.3360.107-1.002-20.512-10.3362.265
198I_DG24:DC-24_J0.078-0.1660.4095.662-11.434-3.228
199I_DG25:DC-25_J-0.599-0.098-0.478-2.609-4.5651.998
1101I_DG27:DC-27_J0.171-0.0380.3663.657-8.260.316
1104I_DG30:DC-30_J-0.6290.355-0.319-14.877-11.6695.547
1122I_DG48:DC-48_J-0.056-0.109-0.0971.2371.153-1.323
1123I_DG49:DC-49_J-0.5620.040.006-0.164-12.4122.142
1126I_DG52:DC-52_J-0.545-0.394-0.978-4.13-16.66-1.603
1131I_DG58:DC-58_J-0.26-0.1120.017-7.499-6.3871.653
1134I_DG61:DC-61_J-0.2720.0940.096.502-15.5957.435
1135I_DG62:DC-62_J-0.483-0.255-0.087-6.013-10.1460.879
1137I_DG64:DC-64_J-0.358-0.374-0.307-1.442-8.837-3.356
1138I_DG65:DC-65_J0.25-0.274-0.2055.82-10.22-0.02
1144I_DG71:DC-71_J-0.208-0.224-0.754-3.1590.028-2.537
12I_DT-72:DA72_J-0.541-0.144-0.646.21-10.273-2.306
16I_DT-68:DA68_J0.002-0.4050.1029.234-6.7432.165
18I_DT-66:DA66_J0.204-0.0830.2992.466-10.160.335
114I_DT-60:DA60_J-0.402-0.1320.35-13.252-15.52.227
120I_DT-54:DA54_J0.736-0.29-0.331-1.076-7.5035.084
123I_DT-51:DA51_J0.1720.20.23-0.522-6.5173.574
132I_DT-42:DA42_J-0.2160.343-0.528-2.867-10.0984.433
134I_DT-40:DA40_J-0.3770.018-0.1455.363-2.191-3.359
136I_DT-38:DA38_J0.071-0.1440.057-0.024-7.7820.708
137I_DT-37:DA37_J-0.082-0.1810.159-16.019-12.748-3.936
138I_DT-36:DA36_J-0.105-0.0810.29-3.933-18.1222.576
145I_DT-29:DA29_J0.113-0.040.016.691-12.8248.0
148I_DT-26:DA26_J-0.01-0.0980.351-5.214-26.4-1.924
152I_DT-22:DA22_J-1.2480.182-0.5168.389-7.617-1.249
162I_DT-12:DA12_J-0.309-0.0170.018-4.665-13.4660.738
164I_DT-10:DA10_J-0.114-0.112-0.13-0.75-15.6983.628
165I_DT-9:DA9_J-0.133-0.0780.068-4.708-12.741.712
170I_DT-4:DA4_J-0.176-0.110.267-2.512-22.3-3.305
175I_DT1:DA-1_J0.115-0.0790.0030.927-13.0092.497
181I_DT7:DA-7_J0.037-0.182-0.144-2.554-9.6060.223
187I_DT13:DA-13_J-0.144-0.1370.0243.107-10.8520.195
191I_DT17:DA-17_J-0.334-0.1320.065-11.838-17.4961.218
192I_DT18:DA-18_J-0.02-0.0860.009-1.978-13.3960.367
193I_DT19:DA-19_J-0.1170.028-0.127-6.548-14.0386.101
194I_DT20:DA-20_J0.113-0.126-0.377-3.503-10.5086.877
197I_DT23:DA-23_J-0.4890.071-0.0891.822-6.4190.268
1105I_DT31:DA-31_J-0.3310.175-0.151-4.298-13.211-5.298
1106I_DT32:DA-32_J-0.1390.3410.017-3.573-11.6124.881
1107I_DT33:DA-33_J0.2920.18-0.109-11.627-22.231-0.645
1113I_DT39:DA-39_J-0.7740.45-0.2485.902-15.384.275
1118I_DT44:DA-44_J-0.7780.0860.0433.651-5.0522.772
1119I_DT45:DA-45_J0.0590.0880.34-5.879-21.332.701
1120I_DT46:DA-46_J-0.4210.0550.096-18.818-15.548-1.34
1121I_DT47:DA-47_J0.1160.028-0.232-9.243-12.0181.008
1124I_DT50:DA-50_J-0.6090.1880.0475.727-7.7482.479
1128I_DT55:DA-55_J-0.4090.128-0.1835.107-7.751-3.413
1130I_DT57:DA-57_J0.2770.0491.063-14.454-14.785-2.075
1136I_DT63:DA-63_J-0.2710.052-0.336-3.515-7.2252.47
1140I_DT67:DA-67_J0.035-0.24-0.1255.135-5.864-0.638
1142I_DT69:DA-69_J0.101-0.1330.131-2.372-16.6064.162
1143I_DT70:DA-70_J0.06-0.131-0.2050.944-9.8361.56
1146I_DT73:DA-73_J0.332-0.217-0.4768.898-2.6644.651

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.