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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0287
PDB ID:
1KX5
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
I_DA-73:DT73_J
-0.324
-0.578
-0.336
-3.796
4.482
-0.73
1
4
I_DA-70:DT70_J
0.066
-0.106
-0.326
7.185
-14.35
5.752
1
5
I_DA-69:DT69_J
-0.003
-0.1
0.191
3.607
-10.754
1.667
1
7
I_DA-67:DT67_J
0.343
-0.049
0.485
5.135
-15.523
0.19
1
11
I_DA-63:DT63_J
0.569
0.003
0.178
4.212
-7.335
-1.951
1
17
I_DA-57:DT57_J
0.008
0.274
0.498
14.009
-15.003
-3.06
1
19
I_DA-55:DT55_J
0.396
-0.018
0.058
-4.755
-12.701
2.234
1
21
I_DA-53:DT53_J
-0.183
-0.36
-0.194
-8.183
-7.486
6.851
1
24
I_DA-50:DT50_J
-0.021
-0.051
-0.04
-8.724
-10.564
1.438
1
27
I_DA-47:DT47_J
-0.008
0.161
0.617
19.04
-23.079
1.234
1
28
I_DA-46:DT46_J
0.228
0.004
0.319
10.043
-17.05
-4.697
1
29
I_DA-45:DT45_J
0.458
0.09
-0.228
-1.279
-25.862
0.903
1
30
I_DA-44:DT44_J
0.103
-0.241
-0.484
-0.741
-8.059
-1.457
1
35
I_DA-39:DT39_J
0.203
0.042
-0.145
-10.496
-17.84
1.762
1
41
I_DA-33:DT33_J
0.111
0.007
0.114
10.009
-17.976
4.032
1
42
I_DA-32:DT32_J
-0.027
0.265
-0.087
6.718
-20.835
1.645
1
43
I_DA-31:DT31_J
0.121
0.382
0.296
10.697
-13.904
1.885
1
51
I_DA-23:DT23_J
0.494
-0.027
-0.423
-3.695
-3.769
-6.095
1
54
I_DA-20:DT20_J
0.327
-0.449
-0.796
-13.143
-14.253
4.442
1
55
I_DA-19:DT19_J
1.351
0.142
-0.704
-10.292
-10.258
11.431
1
56
I_DA-18:DT18_J
0.003
0.051
0.22
2.782
-22.405
-2.261
1
57
I_DA-17:DT17_J
0.152
0.142
0.005
-2.678
-21.979
-4.193
1
61
I_DA-13:DT13_J
-0.129
-0.218
-0.179
-11.719
-11.218
1.138
1
67
I_DA-7:DT7_J
0.349
-0.279
-0.155
8.312
-13.024
0.6
1
73
I_DA-1:DT1_J
-0.083
-0.069
0.041
-1.483
-8.877
1.177
1
74
I_DA0:DT0_J
0.64
-0.175
0.293
-2.418
-7.412
0.538
1
78
I_DA4:DT-4_J
0.222
-0.035
0.123
0.34
-21.701
-3.879
1
83
I_DA9:DT-9_J
0.151
-0.208
-0.191
1.965
-12.19
0.899
1
84
I_DA10:DT-10_J
0.034
0.093
-0.362
3.16
-18.866
6.002
1
86
I_DA12:DT-12_J
0.031
-0.035
-0.011
-1.943
-12.45
4.219
1
96
I_DA22:DT-22_J
0.007
-0.235
-0.358
-12.455
-8.093
-2.243
1
100
I_DA26:DT-26_J
-0.02
0.022
0.11
4.032
-27.61
0.13
1
103
I_DA29:DT-29_J
-0.187
-0.035
-0.239
-4.349
-10.672
9.972
1
110
I_DA36:DT-36_J
-0.24
-0.215
0.337
8.512
-19.049
0.836
1
111
I_DA37:DT-37_J
0.628
-0.104
0.547
19.0
-11.162
-3.983
1
112
I_DA38:DT-38_J
0.069
-0.112
-0.74
-6.248
-14.42
-1.831
1
114
I_DA40:DT-40_J
0.306
0.426
-0.466
-5.266
-2.012
3.356
1
116
I_DA42:DT-42_J
-0.519
0.429
0.045
1.634
-10.897
7.705
1
125
I_DA51:DT-51_J
-0.092
-0.039
0.275
5.996
-8.806
1.63
1
127
I_DA54:DT-54_J
-0.394
-0.123
0.354
1.907
-3.329
8.993
1
133
I_DA60:DT-60_J
-0.149
-0.292
-0.294
-6.265
-16.278
3.729
1
139
I_DA66:DT-66_J
-0.241
-0.169
-0.128
-2.613
-10.405
3.289
1
141
I_DA68:DT-68_J
-0.026
-0.317
0.169
-5.185
-9.008
3.893
1
145
I_DA72:DT-72_J
0.226
-0.174
-0.178
4.337
-2.041
-1.905
1
3
I_DC-71:DG71_J
-0.142
-0.03
-0.364
2.765
-4.612
1.046
1
9
I_DC-65:DG65_J
0.36
-0.097
0.04
-1.166
-8.492
3.254
1
10
I_DC-64:DG64_J
0.254
-0.242
-0.159
1.261
-0.865
-4.525
1
12
I_DC-62:DG62_J
-0.129
0.022
0.016
1.856
-6.279
4.936
1
13
I_DC-61:DG61_J
0.282
-0.064
0.361
-5.879
-11.399
5.606
1
16
I_DC-58:DG58_J
0.269
-0.077
-0.116
5.84
-5.872
-0.94
1
22
I_DC-52:DG52_J
-0.039
0.056
-0.135
-2.483
-10.095
-2.82
1
25
I_DC-49:DG49_J
-0.141
0.008
-0.111
1.293
-11.612
-1.571
1
26
I_DC-48:DG48_J
0.063
-0.204
-0.086
2.227
-11.82
-1.436
1
44
I_DC-30:DG30_J
0.218
0.157
-0.556
15.162
-13.079
3.185
1
47
I_DC-27:DG27_J
0.285
-0.419
0.126
-2.541
-8.536
-4.864
1
49
I_DC-25:DG25_J
0.601
-0.078
-0.16
-2.369
-8.813
2.873
1
50
I_DC-24:DG24_J
0.571
-0.045
-0.27
0.997
-13.274
-0.244
1
53
I_DC-21:DG21_J
0.279
-0.508
-0.351
10.102
-12.904
1.277
1
60
I_DC-14:DG14_J
-0.347
-0.243
-0.119
-9.573
-9.037
1.189
1
66
I_DC-8:DG8_J
0.139
-0.161
-0.319
5.213
-8.096
1.716
1
69
I_DC-5:DG5_J
0.136
-0.153
0.278
-1.367
-8.792
-2.957
1
76
I_DC2:DG-2_J
0.188
-0.112
0.016
-0.556
-13.139
-1.082
1
77
I_DC3:DG-3_J
0.268
-0.133
0.031
2.164
-3.554
0.809
1
80
I_DC6:DG-6_J
0.16
-0.156
0.233
0.055
-26.249
-1.886
1
85
I_DC11:DG-11_J
0.201
-0.08
-0.038
-0.818
-14.516
4.37
1
89
I_DC15:DG-15_J
0.265
-0.165
0.63
3.703
-28.018
-3.368
1
90
I_DC16:DG-16_J
0.276
-0.231
0.418
-8.132
-14.543
-0.111
1
102
I_DC28:DG-28_J
0.384
-0.076
0.081
5.192
-24.657
2.056
1
108
I_DC34:DG-34_J
-0.032
-0.118
-0.15
-4.335
-4.907
0.826
1
109
I_DC35:DG-35_J
0.396
-0.381
0.363
10.388
-15.493
-7.303
1
115
I_DC41:DG-41_J
0.186
-0.043
0.209
3.429
-0.682
6.033
1
117
I_DC43:DG-43_J
0.483
0.196
-0.442
0.066
-14.305
5.497
1
129
I_DC56:DG-56_J
-0.142
-0.049
0.811
-16.114
-16.917
-4.735
1
132
I_DC59:DG-59_J
0.918
-0.071
0.033
10.987
-11.493
-1.571
1
15
I_DG-59:DC59_J
-0.761
-0.091
0.179
-9.016
-3.958
1.385
1
18
I_DG-56:DC56_J
-0.126
0.128
0.276
8.366
-18.284
-3.149
1
31
I_DG-43:DC43_J
0.302
-0.221
-0.966
-20.742
-13.063
-1.446
1
33
I_DG-41:DC41_J
-0.498
0.054
1.14
-5.26
-2.836
7.071
1
39
I_DG-35:DC35_J
-0.198
-0.148
0.442
1.87
-12.415
-0.836
1
40
I_DG-34:DC34_J
-0.273
-0.134
-0.234
4.301
-3.43
1.988
1
46
I_DG-28:DC28_J
-0.028
-0.228
-0.023
-2.561
-22.444
-1.776
1
58
I_DG-16:DC16_J
-0.499
-0.214
0.641
18.223
2.914
0.764
1
59
I_DG-15:DC15_J
0.278
0.258
0.747
0.451
-37.173
-6.301
1
63
I_DG-11:DC11_J
-0.373
-0.153
-0.556
-14.6
-12.582
6.296
1
68
I_DG-6:DC6_J
-0.211
-0.064
0.278
0.758
-24.762
-0.045
1
71
I_DG-3:DC3_J
-0.426
-0.148
-0.099
-4.199
-3.822
2.499
1
72
I_DG-2:DC2_J
0.277
-0.119
0.139
5.051
-7.248
-0.477
1
79
I_DG5:DC-5_J
-0.233
-0.179
0.345
5.219
-4.556
-2.172
1
82
I_DG8:DC-8_J
-0.133
-0.089
0.183
4.287
-5.472
2.119
1
88
I_DG14:DC-14_J
-0.132
-0.151
0.08
-0.629
-3.467
0.669
1
95
I_DG21:DC-21_J
-0.336
0.107
-1.002
-20.512
-10.336
2.265
1
98
I_DG24:DC-24_J
0.078
-0.166
0.409
5.662
-11.434
-3.228
1
99
I_DG25:DC-25_J
-0.599
-0.098
-0.478
-2.609
-4.565
1.998
1
101
I_DG27:DC-27_J
0.171
-0.038
0.366
3.657
-8.26
0.316
1
104
I_DG30:DC-30_J
-0.629
0.355
-0.319
-14.877
-11.669
5.547
1
122
I_DG48:DC-48_J
-0.056
-0.109
-0.097
1.237
1.153
-1.323
1
123
I_DG49:DC-49_J
-0.562
0.04
0.006
-0.164
-12.412
2.142
1
126
I_DG52:DC-52_J
-0.545
-0.394
-0.978
-4.13
-16.66
-1.603
1
131
I_DG58:DC-58_J
-0.26
-0.112
0.017
-7.499
-6.387
1.653
1
134
I_DG61:DC-61_J
-0.272
0.094
0.09
6.502
-15.595
7.435
1
135
I_DG62:DC-62_J
-0.483
-0.255
-0.087
-6.013
-10.146
0.879
1
137
I_DG64:DC-64_J
-0.358
-0.374
-0.307
-1.442
-8.837
-3.356
1
138
I_DG65:DC-65_J
0.25
-0.274
-0.205
5.82
-10.22
-0.02
1
144
I_DG71:DC-71_J
-0.208
-0.224
-0.754
-3.159
0.028
-2.537
1
2
I_DT-72:DA72_J
-0.541
-0.144
-0.64
6.21
-10.273
-2.306
1
6
I_DT-68:DA68_J
0.002
-0.405
0.102
9.234
-6.743
2.165
1
8
I_DT-66:DA66_J
0.204
-0.083
0.299
2.466
-10.16
0.335
1
14
I_DT-60:DA60_J
-0.402
-0.132
0.35
-13.252
-15.5
2.227
1
20
I_DT-54:DA54_J
0.736
-0.29
-0.331
-1.076
-7.503
5.084
1
23
I_DT-51:DA51_J
0.172
0.2
0.23
-0.522
-6.517
3.574
1
32
I_DT-42:DA42_J
-0.216
0.343
-0.528
-2.867
-10.098
4.433
1
34
I_DT-40:DA40_J
-0.377
0.018
-0.145
5.363
-2.191
-3.359
1
36
I_DT-38:DA38_J
0.071
-0.144
0.057
-0.024
-7.782
0.708
1
37
I_DT-37:DA37_J
-0.082
-0.181
0.159
-16.019
-12.748
-3.936
1
38
I_DT-36:DA36_J
-0.105
-0.081
0.29
-3.933
-18.122
2.576
1
45
I_DT-29:DA29_J
0.113
-0.04
0.01
6.691
-12.824
8.0
1
48
I_DT-26:DA26_J
-0.01
-0.098
0.351
-5.214
-26.4
-1.924
1
52
I_DT-22:DA22_J
-1.248
0.182
-0.516
8.389
-7.617
-1.249
1
62
I_DT-12:DA12_J
-0.309
-0.017
0.018
-4.665
-13.466
0.738
1
64
I_DT-10:DA10_J
-0.114
-0.112
-0.13
-0.75
-15.698
3.628
1
65
I_DT-9:DA9_J
-0.133
-0.078
0.068
-4.708
-12.74
1.712
1
70
I_DT-4:DA4_J
-0.176
-0.11
0.267
-2.512
-22.3
-3.305
1
75
I_DT1:DA-1_J
0.115
-0.079
0.003
0.927
-13.009
2.497
1
81
I_DT7:DA-7_J
0.037
-0.182
-0.144
-2.554
-9.606
0.223
1
87
I_DT13:DA-13_J
-0.144
-0.137
0.024
3.107
-10.852
0.195
1
91
I_DT17:DA-17_J
-0.334
-0.132
0.065
-11.838
-17.496
1.218
1
92
I_DT18:DA-18_J
-0.02
-0.086
0.009
-1.978
-13.396
0.367
1
93
I_DT19:DA-19_J
-0.117
0.028
-0.127
-6.548
-14.038
6.101
1
94
I_DT20:DA-20_J
0.113
-0.126
-0.377
-3.503
-10.508
6.877
1
97
I_DT23:DA-23_J
-0.489
0.071
-0.089
1.822
-6.419
0.268
1
105
I_DT31:DA-31_J
-0.331
0.175
-0.151
-4.298
-13.211
-5.298
1
106
I_DT32:DA-32_J
-0.139
0.341
0.017
-3.573
-11.612
4.881
1
107
I_DT33:DA-33_J
0.292
0.18
-0.109
-11.627
-22.231
-0.645
1
113
I_DT39:DA-39_J
-0.774
0.45
-0.248
5.902
-15.38
4.275
1
118
I_DT44:DA-44_J
-0.778
0.086
0.043
3.651
-5.052
2.772
1
119
I_DT45:DA-45_J
0.059
0.088
0.34
-5.879
-21.33
2.701
1
120
I_DT46:DA-46_J
-0.421
0.055
0.096
-18.818
-15.548
-1.34
1
121
I_DT47:DA-47_J
0.116
0.028
-0.232
-9.243
-12.018
1.008
1
124
I_DT50:DA-50_J
-0.609
0.188
0.047
5.727
-7.748
2.479
1
128
I_DT55:DA-55_J
-0.409
0.128
-0.183
5.107
-7.751
-3.413
1
130
I_DT57:DA-57_J
0.277
0.049
1.063
-14.454
-14.785
-2.075
1
136
I_DT63:DA-63_J
-0.271
0.052
-0.336
-3.515
-7.225
2.47
1
140
I_DT67:DA-67_J
0.035
-0.24
-0.125
5.135
-5.864
-0.638
1
142
I_DT69:DA-69_J
0.101
-0.133
0.131
-2.372
-16.606
4.162
1
143
I_DT70:DA-70_J
0.06
-0.131
-0.205
0.944
-9.836
1.56
1
146
I_DT73:DA-73_J
0.332
-0.217
-0.476
8.898
-2.664
4.651
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.