A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 1L1W  PDB ID: 1L1W 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A5:C24_A-1.731-0.1960.462-3.077-9.567-2.707
16A_C6:A23_A1.884-0.2580.365-7.434-11.412-3.691
17A_C7:G22_A0.681-0.1960.1680.22-17.12-2.408
19A_C9:G20_A0.559-0.121-0.2568.035-12.329-1.587
110A_C10:G19_A0.617-0.136-0.2616.224-11.147-1.581
111A_C11:G18_A0.93-0.279-0.2330.762-14.0961.064
11A_G1:C28_A-0.89-0.3130.2751.072-17.985-2.131
12A_G2:C27_A-0.886-0.2950.3330.475-19.818-2.305
14A_G4:C25_A-1.002-0.343-0.089-10.894-23.583-0.432
112A_G12:C17_A0.0760.0530.77224.5967.436-3.916
113A_G13:G16_A6.204-3.2131.98537.157-6.07411.764
13A_U3:A26_A0.455-0.1730.511-10.219-13.605-7.596
18A_U8:G21_A1.573-0.320.0463.748-14.63-0.498

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.