1L3L: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PD0298 PDB ID: 1L3L

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	E_DA2:DT19_G	-0.176	0.082	-0.08	0.954	-6.794	9.794
1	8	E_DA8:DT13_G	0.048	0.095	0.357	15.324	-17.918	-0.436
1	10	E_DA10:DT11_G	-0.139	0.074	0.016	-3.231	-15.41	3.226
1	16	E_DA16:DT5_G	-0.073	-0.063	0.153	13.437	-7.916	-2.705
1	18	E_DA18:DT3_G	-0.204	-0.126	-0.131	-7.843	-12.69	2.083
1	7	E_DC7:DG14_G	0.159	0.033	-0.086	9.146	-0.528	2.836
1	12	E_DC12:DG9_G	-0.02	-0.038	0.279	-8.722	-17.25	0.805
1	15	E_DC15:DG6_G	0.323	-0.201	-0.099	9.979	-3.595	1.913
1	17	E_DC17:DG4_G	0.414	-0.128	-0.378	13.82	-10.75	6.8
1	20	E_DC20:DG1_G	0.098	-0.109	0.328	-15.247	-14.798	-1.909
1	1	E_DG1:DC20_G	-0.329	0.08	-0.681	-12.456	-2.142	1.825
1	4	E_DG4:DC17_G	-0.224	0.009	-0.207	-12.664	-8.304	3.514
1	6	E_DG6:DC15_G	-0.076	-0.033	0.044	-3.353	-3.086	-0.855
1	9	E_DG9:DC12_G	0.062	-0.052	0.331	12.371	-16.942	0.054
1	14	E_DG14:DC7_G	-0.405	-0.065	-0.154	-9.921	-2.321	4.17
1	3	E_DT3:DA18_G	-0.009	-0.068	-0.195	8.967	-6.352	9.711
1	5	E_DT5:DA16_G	-0.194	-0.017	0.034	-10.021	-9.41	0.626
1	11	E_DT11:DA10_G	0.215	-0.1	-0.094	3.936	-17.592	6.859
1	13	E_DT13:DA8_G	-0.065	0.191	0.307	-12.962	-13.792	0.105
1	19	E_DT19:DA2_G	-0.032	0.012	0.254	-3.987	-14.31	1.588
1	22	F_DA102:DT119_H	0.215	0.03	-0.051	1.485	-7.509	6.799
1	28	F_DA108:DT113_H	-0.169	0.161	0.284	18.9	-18.375	-3.707
1	30	F_DA110:DT111_H	-0.071	0.066	0.045	-1.715	-19.032	2.79
1	36	F_DA116:DT105_H	0.037	-0.344	0.006	11.85	-9.194	5.875
1	38	F_DA118:DT103_H	-0.11	-0.098	-0.091	-7.653	-12.905	3.797
1	27	F_DC107:DG114_H	0.217	0.04	-0.128	10.935	-0.684	2.08
1	32	F_DC112:DG109_H	-0.066	-0.089	0.206	-6.032	-18.776	-0.229
1	35	F_DC115:DG106_H	0.379	-0.159	-0.151	8.833	-5.295	-0.572
1	37	F_DC117:DG104_H	0.182	0.052	-0.212	14.674	-8.748	2.014
1	40	F_DC120:DG101_H	0.308	-0.211	0.333	-15.536	-15.041	-2.61
1	21	F_DG101:DC120_H	-0.439	0.033	-0.531	-6.981	-3.786	3.466
1	24	F_DG104:DC117_H	-0.306	-0.035	-0.042	-9.051	-6.596	3.713
1	26	F_DG106:DC115_H	-0.208	-0.236	-0.122	-3.859	-2.572	1.803
1	29	F_DG109:DC112_H	0.004	-0.009	0.314	12.213	-16.396	0.338
1	34	F_DG114:DC107_H	-0.367	-0.131	-0.145	-9.653	-5.616	5.858
1	23	F_DT103:DA118_H	-0.214	-0.029	0.015	5.664	-7.272	7.742
1	25	F_DT105:DA116_H	-0.194	-0.043	0.246	-10.256	-9.171	1.308
1	31	F_DT111:DA110_H	0.243	-0.155	0.037	3.319	-18.076	4.421
1	33	F_DT113:DA108_H	0.022	0.032	0.148	-12.278	-16.556	1.556
1	39	F_DT119:DA102_H	0.034	-0.08	0.238	-3.497	-15.062	1.422

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.