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As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0298
PDB ID:
1L3L
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
E_DA2:DT19_G
-0.176
0.082
-0.08
0.954
-6.794
9.794
1
8
E_DA8:DT13_G
0.048
0.095
0.357
15.324
-17.918
-0.436
1
10
E_DA10:DT11_G
-0.139
0.074
0.016
-3.231
-15.41
3.226
1
16
E_DA16:DT5_G
-0.073
-0.063
0.153
13.437
-7.916
-2.705
1
18
E_DA18:DT3_G
-0.204
-0.126
-0.131
-7.843
-12.69
2.083
1
7
E_DC7:DG14_G
0.159
0.033
-0.086
9.146
-0.528
2.836
1
12
E_DC12:DG9_G
-0.02
-0.038
0.279
-8.722
-17.25
0.805
1
15
E_DC15:DG6_G
0.323
-0.201
-0.099
9.979
-3.595
1.913
1
17
E_DC17:DG4_G
0.414
-0.128
-0.378
13.82
-10.75
6.8
1
20
E_DC20:DG1_G
0.098
-0.109
0.328
-15.247
-14.798
-1.909
1
1
E_DG1:DC20_G
-0.329
0.08
-0.681
-12.456
-2.142
1.825
1
4
E_DG4:DC17_G
-0.224
0.009
-0.207
-12.664
-8.304
3.514
1
6
E_DG6:DC15_G
-0.076
-0.033
0.044
-3.353
-3.086
-0.855
1
9
E_DG9:DC12_G
0.062
-0.052
0.331
12.371
-16.942
0.054
1
14
E_DG14:DC7_G
-0.405
-0.065
-0.154
-9.921
-2.321
4.17
1
3
E_DT3:DA18_G
-0.009
-0.068
-0.195
8.967
-6.352
9.711
1
5
E_DT5:DA16_G
-0.194
-0.017
0.034
-10.021
-9.41
0.626
1
11
E_DT11:DA10_G
0.215
-0.1
-0.094
3.936
-17.592
6.859
1
13
E_DT13:DA8_G
-0.065
0.191
0.307
-12.962
-13.792
0.105
1
19
E_DT19:DA2_G
-0.032
0.012
0.254
-3.987
-14.31
1.588
1
22
F_DA102:DT119_H
0.215
0.03
-0.051
1.485
-7.509
6.799
1
28
F_DA108:DT113_H
-0.169
0.161
0.284
18.9
-18.375
-3.707
1
30
F_DA110:DT111_H
-0.071
0.066
0.045
-1.715
-19.032
2.79
1
36
F_DA116:DT105_H
0.037
-0.344
0.006
11.85
-9.194
5.875
1
38
F_DA118:DT103_H
-0.11
-0.098
-0.091
-7.653
-12.905
3.797
1
27
F_DC107:DG114_H
0.217
0.04
-0.128
10.935
-0.684
2.08
1
32
F_DC112:DG109_H
-0.066
-0.089
0.206
-6.032
-18.776
-0.229
1
35
F_DC115:DG106_H
0.379
-0.159
-0.151
8.833
-5.295
-0.572
1
37
F_DC117:DG104_H
0.182
0.052
-0.212
14.674
-8.748
2.014
1
40
F_DC120:DG101_H
0.308
-0.211
0.333
-15.536
-15.041
-2.61
1
21
F_DG101:DC120_H
-0.439
0.033
-0.531
-6.981
-3.786
3.466
1
24
F_DG104:DC117_H
-0.306
-0.035
-0.042
-9.051
-6.596
3.713
1
26
F_DG106:DC115_H
-0.208
-0.236
-0.122
-3.859
-2.572
1.803
1
29
F_DG109:DC112_H
0.004
-0.009
0.314
12.213
-16.396
0.338
1
34
F_DG114:DC107_H
-0.367
-0.131
-0.145
-9.653
-5.616
5.858
1
23
F_DT103:DA118_H
-0.214
-0.029
0.015
5.664
-7.272
7.742
1
25
F_DT105:DA116_H
-0.194
-0.043
0.246
-10.256
-9.171
1.308
1
31
F_DT111:DA110_H
0.243
-0.155
0.037
3.319
-18.076
4.421
1
33
F_DT113:DA108_H
0.022
0.032
0.148
-12.278
-16.556
1.556
1
39
F_DT119:DA102_H
0.034
-0.08
0.238
-3.497
-15.062
1.422
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.