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As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD0298  PDB ID: 1L3L 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA2:DT19_G-0.1760.082-0.080.954-6.7949.794
18E_DA8:DT13_G0.0480.0950.35715.324-17.918-0.436
110E_DA10:DT11_G-0.1390.0740.016-3.231-15.413.226
116E_DA16:DT5_G-0.073-0.0630.15313.437-7.916-2.705
118E_DA18:DT3_G-0.204-0.126-0.131-7.843-12.692.083
17E_DC7:DG14_G0.1590.033-0.0869.146-0.5282.836
112E_DC12:DG9_G-0.02-0.0380.279-8.722-17.250.805
115E_DC15:DG6_G0.323-0.201-0.0999.979-3.5951.913
117E_DC17:DG4_G0.414-0.128-0.37813.82-10.756.8
120E_DC20:DG1_G0.098-0.1090.328-15.247-14.798-1.909
11E_DG1:DC20_G-0.3290.08-0.681-12.456-2.1421.825
14E_DG4:DC17_G-0.2240.009-0.207-12.664-8.3043.514
16E_DG6:DC15_G-0.076-0.0330.044-3.353-3.086-0.855
19E_DG9:DC12_G0.062-0.0520.33112.371-16.9420.054
114E_DG14:DC7_G-0.405-0.065-0.154-9.921-2.3214.17
13E_DT3:DA18_G-0.009-0.068-0.1958.967-6.3529.711
15E_DT5:DA16_G-0.194-0.0170.034-10.021-9.410.626
111E_DT11:DA10_G0.215-0.1-0.0943.936-17.5926.859
113E_DT13:DA8_G-0.0650.1910.307-12.962-13.7920.105
119E_DT19:DA2_G-0.0320.0120.254-3.987-14.311.588
122F_DA102:DT119_H0.2150.03-0.0511.485-7.5096.799
128F_DA108:DT113_H-0.1690.1610.28418.9-18.375-3.707
130F_DA110:DT111_H-0.0710.0660.045-1.715-19.0322.79
136F_DA116:DT105_H0.037-0.3440.00611.85-9.1945.875
138F_DA118:DT103_H-0.11-0.098-0.091-7.653-12.9053.797
127F_DC107:DG114_H0.2170.04-0.12810.935-0.6842.08
132F_DC112:DG109_H-0.066-0.0890.206-6.032-18.776-0.229
135F_DC115:DG106_H0.379-0.159-0.1518.833-5.295-0.572
137F_DC117:DG104_H0.1820.052-0.21214.674-8.7482.014
140F_DC120:DG101_H0.308-0.2110.333-15.536-15.041-2.61
121F_DG101:DC120_H-0.4390.033-0.531-6.981-3.7863.466
124F_DG104:DC117_H-0.306-0.035-0.042-9.051-6.5963.713
126F_DG106:DC115_H-0.208-0.236-0.122-3.859-2.5721.803
129F_DG109:DC112_H0.004-0.0090.31412.213-16.3960.338
134F_DG114:DC107_H-0.367-0.131-0.145-9.653-5.6165.858
123F_DT103:DA118_H-0.214-0.0290.0155.664-7.2727.742
125F_DT105:DA116_H-0.194-0.0430.246-10.256-9.1711.308
131F_DT111:DA110_H0.243-0.1550.0373.319-18.0764.421
133F_DT113:DA108_H0.0220.0320.148-12.278-16.5561.556
139F_DT119:DA102_H0.034-0.080.238-3.497-15.0621.422

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.